Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, China; Nanjing Forestry University, Nanjing 210037, China.
Key Laboratory of State Forestry Administration on Tropical Forestry Research, Research Institute of Tropical Forestry, Chinese Academy of Forestry, Guangzhou 510520, China.
Genomics. 2020 Jan;112(1):603-614. doi: 10.1016/j.ygeno.2019.04.012. Epub 2019 Apr 18.
Russula griseocarnosa is a species of edible ectomycorrhizal fungi with medicinal properties that grows in southern China. Total DNA was isolated from a fresh fruiting body of R. griseocarnosa and subjected to sequencing using Illumina Hiseq with the PacBio RS sequencing platform. Here, we present the 64.81 Mb draft genome map of R. griseocarnosa based on 471 scaffolds and 16,128 coding protein genes. The gene annotation of protein coding genes was used to obtain corresponding annotations by blastp. Phylogenetic analysis revealed a close evolutionary relationship of R. griseocarnosa to Heterobasidion irregulare and Stereum hirsutum in the core Russulales clade. The R. griseocarnosa genome encodes a repertoire of enzymes engaged in carbohydrate and polysaccharide metabolism, along with cytochrome P450s and secondary metabolite biosynthesis. The genome content of R. griseocarnosa provides insights into the genetic basis of its reported medicinal properties and serves as a reference for comparative genomics of fungi.
灰花纹鹅膏是一种具有药用特性的可食用外生菌根真菌,生长在中国南方。从新鲜的灰花纹鹅膏子实体中提取总 DNA,使用 Illumina Hiseq 与 PacBio RS 测序平台进行测序。在此,我们基于 471 个支架和 16128 个编码蛋白基因,呈现了灰花纹鹅膏的 64.81Mb 基因组草图。通过 blastp 对蛋白编码基因的基因注释进行注释,获得了相应的注释。系统发育分析表明,灰花纹鹅膏与异担子纲的不规则异担子菌和糙皮侧耳在核心 Russulales 分支中具有密切的进化关系。灰花纹鹅膏基因组编码了一系列参与碳水化合物和多糖代谢的酶,以及细胞色素 P450s 和次生代谢物生物合成。灰花纹鹅膏的基因组内容为其报道的药用特性的遗传基础提供了深入了解,并为真菌的比较基因组学提供了参考。