一种用于单分子定位显微镜的基于镶嵌的共定位分析方法。

A tessellation-based colocalization analysis approach for single-molecule localization microscopy.

作者信息

Levet Florian, Julien Guillaume, Galland Rémi, Butler Corey, Beghin Anne, Chazeau Anaël, Hoess Philipp, Ries Jonas, Giannone Grégory, Sibarita Jean-Baptiste

机构信息

Interdisciplinary Institute for Neuroscience, University of Bordeaux, Bordeaux, 33076, France.

Interdisciplinary Institute for Neuroscience, Centre National de la Recherche Scientifique (CNRS) UMR 5297, Bordeaux, 33076, France.

出版信息

Nat Commun. 2019 May 30;10(1):2379. doi: 10.1038/s41467-019-10007-4.

Abstract

Multicolor single-molecule localization microscopy (λSMLM) is a powerful technique to reveal the relative nanoscale organization and potential colocalization between different molecular species. While several standard analysis methods exist for pixel-based images, λSMLM still lacks such a standard. Moreover, existing methods only work on 2D data and are usually sensitive to the relative molecular organization, a very important parameter to consider in quantitative SMLM. Here, we present an efficient, parameter-free colocalization analysis method for 2D and 3D λSMLM using tessellation analysis. We demonstrate that our method allows for the efficient computation of several popular colocalization estimators directly from molecular coordinates and illustrate its capability to analyze multicolor SMLM data in a robust and efficient manner.

摘要

多色单分子定位显微镜技术(λSMLM)是一种强大的技术,可用于揭示不同分子种类之间的相对纳米级组织和潜在的共定位情况。虽然针对基于像素的图像存在几种标准分析方法,但λSMLM仍缺乏这样的标准。此外,现有方法仅适用于二维数据,并且通常对相对分子组织敏感,而相对分子组织是定量单分子定位显微镜技术中一个非常重要的参数。在此,我们提出一种使用镶嵌分析的二维和三维λSMLM高效、无参数的共定位分析方法。我们证明,我们的方法允许直接从分子坐标高效计算几种常用的共定位估计量,并展示其以稳健且高效的方式分析多色单分子定位显微镜数据的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5f5/6542817/5451c5768a5f/41467_2019_10007_Fig1_HTML.jpg

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