Costantini Nicholas V, Ganguly Himal K, Martin Maxwell I, Wenzell Nicole A, Yap Glenn P A, Zondlo Neal J
Department of Chemistry and Biochemistry, University of Delaware, Newark, DE, 19716, USA.
Chemistry. 2019 Aug 27;25(48):11356-11364. doi: 10.1002/chem.201902382. Epub 2019 Aug 5.
4-Substitution on proline directly impacts protein main chain conformational preferences. The structural effects of N-acyl substitution and of 4-substitution were examined by NMR spectroscopy and X-ray crystallography on minimal molecules with a proline 4S-nitrobenzoate. The effects of N-acyl substitution on conformation were attenuated in the 4S-nitrobenzoate context, due to the minimal role of the n→π* interaction in stabilizing extended conformations. By X-ray crystallography, an extended conformation was observed for most molecules. The formyl derivative adopted a δ conformation that is observed at the i+2 position of β-turns. Computational analysis indicated that the structures observed crystallographically represent the inherent conformational preferences of 4S-substituted prolines with electron-withdrawing 4-position substituents. The divergent conformational preferences of 4R- and 4S-substituted prolines suggest their wider structure-specific application in molecular design. In particular, the proline endo ring pucker favored by 4S-substituted prolines uniquely promotes the δ conformation [(ϕ, ψ) ≈(-80°, 0°)] found in β-turns. In contrast to other acyl capping groups, the pivaloyl group strongly promoted trans amide bond and polyproline II helix conformation, with a close n→π* interaction in the crystalline state, despite the endo ring pucker, suggesting its special capabilities in promoting compact conformations in ϕ due to its strongly electron-donating character.
脯氨酸的4-取代直接影响蛋白质主链的构象偏好。通过核磁共振光谱和X射线晶体学,对含有脯氨酸4S-硝基苯甲酸酯的最小分子研究了N-酰基取代和4-取代的结构效应。在4S-硝基苯甲酸酯环境中,N-酰基取代对构象的影响减弱,这是因为n→π相互作用在稳定伸展构象中的作用最小。通过X射线晶体学,观察到大多数分子呈伸展构象。甲酰基衍生物呈现出在β-转角的i + 2位置观察到的δ构象。计算分析表明,晶体学观察到的结构代表了具有吸电子4-位取代基的4S-取代脯氨酸的固有构象偏好。4R-和4S-取代脯氨酸不同的构象偏好表明它们在分子设计中具有更广泛的结构特异性应用。特别是,4S-取代脯氨酸所偏好的脯氨酸内环氧皱独特地促进了β-转角中发现的δ构象[(ϕ, ψ)≈(-80°, 0°)]。与其他酰基封端基团相比,新戊酰基强烈促进反式酰胺键和聚脯氨酸II螺旋构象,尽管存在内环氧皱,但在晶体状态下有紧密的n→π相互作用,这表明由于其强供电子特性,它在促进ϕ中的紧密构象方面具有特殊能力。