Duman Ali Nabi, Tatar Ahmet Emin, Pirim Harun
Department of Mathematics and Statistics, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia.
Department of Systems Engineering, King Fahd University of Petroleum and Minerals, Dhahran 31261, Saudi Arabia.
Brain Sci. 2019 Jun 19;9(6):144. doi: 10.3390/brainsci9060144.
The increasing availability of high temporal resolution neuroimaging data has increased the efforts to understand the dynamics of neural functions. Until recently, there are few studies on generative models supporting classification and prediction of neural systems compared to the description of the architecture. However, the requirement of collapsing data spatially and temporally in the state-of-the art methods to analyze functional magnetic resonance imaging (fMRI), electroencephalogram (EEG) and magnetoencephalography (MEG) data cause loss of important information. In this study, we addressed this issue using a topological data analysis (TDA) method, called Mapper, which visualizes evolving patterns of brain activity as a mathematical graph. Accordingly, we analyzed preprocessed MEG data of 83 subjects from Human Connectome Project (HCP) collected during working memory -back task. We examined variation in the dynamics of the brain states with the Mapper graphs, and to determine how this variation relates to measures such as response time and performance. The application of the Mapper method to MEG data detected a novel neuroimaging marker that explained the performance of the participants along with the ground truth of response time. In addition, TDA enabled us to distinguish two task-positive brain activations during 0-back and 2-back tasks, which is hard to detect with the other pipelines that require collapsing the data in the spatial and temporal domain. Further, the Mapper graphs of the individuals also revealed one large group in the middle of the stimulus detecting the high engagement in the brain with fine temporal resolution, which could contribute to increase spatiotemporal resolution by merging different imaging modalities. Hence, our work provides another evidence to the effectiveness of the TDA methods for extracting subtle dynamic properties of high temporal resolution MEG data without the temporal and spatial collapse.
高时间分辨率神经成像数据的可得性不断提高,这加大了人们对理解神经功能动态的努力。直到最近,与对神经系统架构的描述相比,关于支持神经系统分类和预测的生成模型的研究还很少。然而,在分析功能磁共振成像(fMRI)、脑电图(EEG)和脑磁图(MEG)数据的现有方法中,在空间和时间上压缩数据的要求导致了重要信息的丢失。在本研究中,我们使用一种称为Mapper的拓扑数据分析(TDA)方法解决了这个问题,该方法将大脑活动的演变模式可视化为一个数学图。相应地,我们分析了来自人类连接体项目(HCP)的83名受试者在工作记忆回退任务期间收集的预处理MEG数据。我们用Mapper图检查了脑状态动态的变化,并确定这种变化与反应时间和表现等测量指标之间的关系。将Mapper方法应用于MEG数据检测到了一种新的神经成像标记物,它解释了参与者的表现以及反应时间的实际情况。此外,TDA使我们能够区分0-back和2-back任务期间的两种任务阳性脑激活,这是其他需要在空间和时间域压缩数据的流程难以检测到的。此外,个体的Mapper图还揭示了在刺激过程中处于中间位置的一个大组,该组以精细的时间分辨率检测到大脑中的高参与度,这可能有助于通过合并不同的成像模态来提高时空分辨率。因此,我们的工作为TDA方法在不进行时空压缩的情况下提取高时间分辨率MEG数据的细微动态特性的有效性提供了又一证据。