Department of Environmental Science, Aarhus University, Frederiksborgvej, 399, 4000 Roskilde, Denmark.
Department of Plant and Environmental Sciences, Thorvaldsensvej 40, 1871 Frederiksberg, Denmark.
Viruses. 2019 Jul 4;11(7):611. doi: 10.3390/v11070611.
is a bacterium with probiotic properties and promising applications in the food industry and agriculture. So far, bacteriophages of this bacterium have been moderately addressed. We examined the diversity of five new phages via whole genome shotgun sequencing and in silico protein predictions. Moreover, we looked into their phylogeny and their potential genomic similarities to other complete phage genome records through extensive nucleotide and protein comparisons. These analyses revealed a high degree of similarity among the five phages, which extended to the vast majority of predicted virion-associated proteins. Based on these, we selected one of the phages as a representative and performed transmission electron microscopy and structural protein sequencing tests. Overall, the results suggested that the five phages belong to the family , they have a long genome of 137,973-141,344 bp, a G/C content of 36.3-36.6% that is quite distinct from their host's, and surprisingly, 7 to 15 tRNAs. Only an average 41/174 of their predicted genes were assigned a function. The comparative analyses unraveled considerable genetic diversity for the five phages in this study. Hence, the new genus "Semelevirus" was proposed, comprising exclusively of the five phages. This novel lineage of phages provides further insight into the genetic heterogeneity of phages infecting sp. The five new phages have potential value for the development of more robust starters through, for example, the selection of mutants insensitive to phage infections. The five phages could also form part of phage cocktails, which producers would apply in different stages of fermentations in order to create a range of organoleptic outputs.
是一种具有益生菌特性的细菌,在食品工业和农业中有很有前途的应用。到目前为止,这种细菌的噬菌体已经得到了适度的研究。我们通过全基因组鸟枪法测序和计算机蛋白质预测研究了五种新噬菌体的多样性。此外,我们通过广泛的核苷酸和蛋白质比较,研究了它们的系统发育及其与其他完整噬菌体基因组记录的潜在基因组相似性。这些分析表明,这五种噬菌体之间具有高度的相似性,延伸到绝大多数预测的病毒相关蛋白。在此基础上,我们选择了其中一种噬菌体作为代表,并进行了透射电子显微镜和结构蛋白测序测试。总的来说,结果表明,这五种噬菌体属于科,它们具有 137973-141344bp 的长基因组,36.3-36.6%的 G/C 含量与宿主的非常不同,而且令人惊讶的是,有 7 到 15 个 tRNA。只有平均 41/174 个预测基因被赋予了功能。比较分析揭示了本研究中五种噬菌体的相当大的遗传多样性。因此,提出了一个新的属“Semelevirus”,仅由这五种噬菌体组成。这种新的噬菌体谱系进一步揭示了感染 sp 的噬菌体的遗传异质性。这五种新的噬菌体通过例如选择对噬菌体感染不敏感的突变体,为开发更健壮的启动子提供了潜在的价值。这五种噬菌体也可以形成噬菌体鸡尾酒的一部分,生产者可以在发酵的不同阶段应用这些噬菌体,以产生一系列感官输出。