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中国青岛沿海表层海水中分离的两株新型裂解性海洋弧菌噬菌体的基因组分析。

Genome Analysis of Two Novel Lytic Vibrio maritimus Phages Isolated from the Coastal Surface Seawater of Qingdao, China.

机构信息

College of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.

Institute of Evolution and Marine Biodiversity, Ocean University of China, Qingdao, 266003, China.

出版信息

Curr Microbiol. 2019 Oct;76(10):1225-1233. doi: 10.1007/s00284-019-01736-2. Epub 2019 Jul 13.

Abstract

Two novel Vibrio phages, LP.1 and LP.2 that infected Vibrio maritimus R-40493, were isolated from surface seawater in Qingdao coastal area by the double-agar layer method. Morphological analysis by transmission electron microscope showed that the two phages displayed head-tail structures with icosahedral heads of 62.37 and 54.00 nm in diameter and long non-contractile tails of 119.00 and 105.20 nm in length, respectively, and can be grouped into the Siphoviridae family. Thermal and pH sensitivity tests exhibited that LP.1 was stable at temperature ranging from - 20 to 65 °C and at pH ranging from 5 to 12, and LP.2 showed vitality over a wider range of temperature (- 20-75 °C) and pH (3-12). Both LP.1 and LP.2 contained linear and double-stranded DNA genomes with a length of 46,791-bp and 37,128-bp, respectively. The genome of both phages can be classified into four functional groups, including DNA replication and regulation, phage packaging, phage structure, and additional function. The bioinformatic analysis demonstrated that the Vibrio phages LP.1 and LP.2 are novel phages. By conducting morphological, biochemical, and genomic analysis, our study provides useful information for further research on the interaction between Vibrio phages and their host.

摘要

两种新型的噬弧菌 LP.1 和 LP.2 感染了来自青岛沿海地区的海洋细菌 Vibrio maritimus R-40493,通过双层琼脂法从表层海水中分离出来。透射电子显微镜的形态分析表明,这两种噬菌体呈现出头部-尾部结构,直径分别为 62.37nm 和 54.00nm 的二十面体头部和 119.00nm 和 105.20nm 的长不可收缩尾部,可归类为长尾噬菌体科。热和 pH 值敏感性测试表明,LP.1 在温度范围为-20 至 65°C 和 pH 值范围为 5 至 12 时稳定,而 LP.2 在更宽的温度(-20-75°C)和 pH 值(3-12)范围内表现出活力。LP.1 和 LP.2 均含有线性和双链 DNA 基因组,长度分别为 46791-bp 和 37128-bp。两种噬菌体的基因组可分为四个功能组,包括 DNA 复制和调控、噬菌体包装、噬菌体结构和附加功能。生物信息学分析表明,噬弧菌 LP.1 和 LP.2 是新型噬菌体。通过形态学、生物化学和基因组分析,我们的研究为进一步研究噬弧菌与其宿主之间的相互作用提供了有用的信息。

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