• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

基于基因组的重新分类：Borchert 等人（2007 年）的 Bacillus plakortidis 和 Ghosh 等人（2007 年）的 Bacillus lehensis 被归类为 Bacillus oshimensis Yumoto 等人（2005 年）的后来的异型同义词；Madhaiyan 等人（2011 年）的 Bacillus rhizosphaerae 被归类为 Bacillus clausii Nielsen 等人（1995 年）的后来的异型同义词。

Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.

机构信息

Agricultural Bio-resources Research Institute, Fujian Academy of Agricultural Sciences, Fuzhou, 350003, Fujian, People's Republic of China.

State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2019 Dec;112(12):1725-1730. doi: 10.1007/s10482-019-01299-z. Epub 2019 Jul 16.

DOI:10.1007/s10482-019-01299-z
PMID:31312953
Abstract

In the present study, phylogenetic and genome-based comparison was carried out to clarify the taxonomic positions of alkaliphilic Bacillus species, Bacillus plakortidis, Bacillus lehensis, Bacillus oshimensis, Bacillus rhizosphaerae and Bacillus clausii. Phylogenetic trees based on 16S rRNA gene sequences and concatenated protein marker genes were constructed. Average nucleotide identity (ANI) values were calculated to compare genetic relatedness. In phylogenetic trees, B. plakortidis DSM 19153, B. lehensis DSM 19099, and B. oshimensis DSM 18940; B. rhizosphaerae DSM 21911 and B. clausii DSM 8716 clade together. The average nucleotide identity (ANI) values between B. oshimensis DSM 18940, B. plakortidis DSM 19153 and B. lehensis DSM 19099 ranged from 98.7-98.8%, while the ANI values between B. rhizosphaerae DSM 21911 and B. clausii DSM 8716 were 95.2-95.5%. The ANI values were higher than the recognized threshold value for bacterial species delineation. Based on phylogenetic and genome comparison we propose reclassification of B. plakortidis and B. lehensis as a later heterotypic synonym of B. oshimensis; B. rhizosphaerae as a later heterotypic synonym of B. clausii.

摘要

在本研究中，进行了基于系统发育和基因组的比较，以阐明嗜碱性芽孢杆菌属物种，即 plakortidis 芽孢杆菌、lehensis 芽孢杆菌、oshimensis 芽孢杆菌、rhizosphaerae 芽孢杆菌和 clausii 芽孢杆菌的分类地位。构建了基于 16S rRNA 基因序列和串联蛋白标记基因的系统发育树。计算了平均核苷酸同一性 (ANI) 值以比较遗传相关性。在系统发育树中，plakortidis DSM 19153、lehensis DSM 19099 和 oshimensis DSM 18940；rhizosphaerae DSM 21911 和 clausii DSM 8716 聚类在一起。oshimensis DSM 18940、plakortidis DSM 19153 和 lehensis DSM 19099 之间的平均核苷酸同一性 (ANI) 值在 98.7-98.8%之间，而 rhizosphaerae DSM 21911 和 clausii DSM 8716 之间的 ANI 值在 95.2-95.5%之间。ANI 值高于细菌种划分的公认阈值。基于系统发育和基因组比较，我们建议将 plakortidis 和 lehensis 重新分类为 oshimensis 的后期异型同义词；rhizosphaerae 为 clausii 的后期异型同义词。

相似文献

1
Genome-based reclassification of Bacillus plakortidis Borchert et al. 2007 and Bacillus lehensis Ghosh et al. 2007 as a later heterotypic synonym of Bacillus oshimensis Yumoto et al. 2005; Bacillus rhizosphaerae Madhaiyan et al. 2011 as a later heterotypic synonym of Bacillus clausii Nielsen et al. 1995.基于基因组的重新分类：Borchert 等人（2007 年）的 Bacillus plakortidis 和 Ghosh 等人（2007 年）的 Bacillus lehensis 被归类为 Bacillus oshimensis Yumoto 等人（2005 年）的后来的异型同义词；Madhaiyan 等人（2011 年）的 Bacillus rhizosphaerae 被归类为 Bacillus clausii Nielsen 等人（1995 年）的后来的异型同义词。
Antonie Van Leeuwenhoek. 2019 Dec;112(12):1725-1730. doi: 10.1007/s10482-019-01299-z. Epub 2019 Jul 16.
2
Genome-based reclassification of as a later heterotypic synonym of .基于基因组的重新分类， 将 作为 的后同型异名。
Int J Syst Evol Microbiol. 2019 Nov;69(11):3599-3602. doi: 10.1099/ijsem.0.003666.
3
Reclassification of Bacillus aryabhattai Shivaji et al. 2009 as a later heterotypic synonym of Bacillus megaterium de Bary 1884 (Approved Lists 1980).将 Shivaji 等人 2009 年命名的 Bacillus aryabhattai 重新分类为 Bacillus megaterium de Bary 1884 的晚异名（1980 年批准的名单）。
FEMS Microbiol Lett. 2019 Nov 1;366(22). doi: 10.1093/femsle/fnz258.
4
Examination into the taxonomic position of Bacillus thermotolerans Yang et al., 2013, proposal for its reclassification into a new genus and species Quasibacillus thermotolerans gen. nov., comb. nov. and reclassification of B. encimensis Dastager et al., 2015 as a later heterotypic synonym of B. badius.研究探讨了杨等（2013 年）提出的耐温芽孢杆菌的分类地位，建议将其重新分类为一个新属和新种——耐热拟杆菌属，新组合属名。同时，将达斯塔格尔等（2015 年）提出的 B. encimensis 重新分类为 B. badius 的一个后同型异名。
Syst Appl Microbiol. 2017 Oct;40(7):411-422. doi: 10.1016/j.syapm.2017.07.010. Epub 2017 Sep 12.
5
Genome-based reclassification of Anoxybacillus karvacharensis Panosyan et al. as a later heterotypic synonym of Anoxybacillus kestanbolensis Dulger et al. 2004; A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai et al. 2011 as a later heterotypic synonym of A. tengchongensis DSM 23211 Zhang et al. 2011.基于基因组的重新分类，将 Anoxybacillus karvacharensis Panosyan 等人归类为 Anoxybacillus kestanbolensis Dulger 等人的晚型异名；A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai 等人归类为 A. tengchongensis DSM 23211 Zhang 等人的晚型异名。
Arch Microbiol. 2022 Jun 29;204(7):439. doi: 10.1007/s00203-022-03070-x.
6
Genome-based reclassification of as a later heterotypic synonym of .基于基因组的再分类， 将 作为 的后同型异名。
Int J Syst Evol Microbiol. 2024 Aug;74(8). doi: 10.1099/ijsem.0.006485.
7
Genome-based reclassification of Zillig . 1996 as a later heterotypic synonym of Schleper . 1996.基于基因组的重新分类，将齐利格（Zillig. 1996）列为施莱珀（Schleper. 1996）后来的异名。
Int J Syst Evol Microbiol. 2023 Apr;73(4). doi: 10.1099/ijsem.0.005851.
8
Genome-based reclassification of Anoxybacillus kamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillus ayderensis Dulger et al. 2004.基于基因组的重新分类：将 Kamchatkensis 属的 Kevbrin 等（2005 年）更改为 Ayderensis 属的 Dulger 等（2004 年）的后期异名。
Arch Microbiol. 2022 Sep 10;204(10):613. doi: 10.1007/s00203-022-03201-4.
9
Genome-based reclassification of as a later heterotypic synonym of .基于基因组的重新分类，将 作为 的后同型同义词。
Int J Syst Evol Microbiol. 2021 Feb;71(2). doi: 10.1099/ijsem.0.004642.
10
Genome-based reclassification of Aguilera . 2001 as a later heterotypic synonym of (Prazmowski 1880) Ash . 1994.基于基因组的 Aguilera. 2001 重新分类为（Prazmowski 1880）Ash. 1994 的后期异型同义名。
Int J Syst Evol Microbiol. 2020 May;70(5):3134-3138. doi: 10.1099/ijsem.0.004140.

引用本文的文献

1
Genome-based reclassification of Anoxybacillus salavatliensis Cihan et al. 2011 as a later heterotypic synonym of Anoxybacillus gonensis Belduz et al. 2003.基于基因组将2011年Cihan等人鉴定的萨拉瓦特利无氧芽孢杆菌重新分类为2003年Belduz等人鉴定的贡内斯无氧芽孢杆菌的晚出异名。
Antonie Van Leeuwenhoek. 2023 May;116(5):415-423. doi: 10.1007/s10482-023-01813-4. Epub 2023 Feb 2.
2
Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species .新型嗜堿放线菌种的比较基因组分析。
Pol J Microbiol. 2022 Sep 24;71(3):453-461. doi: 10.33073/pjm-2022-040. eCollection 2022 Sep 1.
3
Genome-based reclassification of Anoxybacillus karvacharensis Panosyan et al. as a later heterotypic synonym of Anoxybacillus kestanbolensis Dulger et al. 2004; A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai et al. 2011 as a later heterotypic synonym of A. tengchongensis DSM 23211 Zhang et al. 2011.
基于基因组的重新分类，将 Anoxybacillus karvacharensis Panosyan 等人归类为 Anoxybacillus kestanbolensis Dulger 等人的晚型异名；A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai 等人归类为 A. tengchongensis DSM 23211 Zhang 等人的晚型异名。
Arch Microbiol. 2022 Jun 29;204(7):439. doi: 10.1007/s00203-022-03070-x.
4
Two novel alkaliphiles, Bacillus alkalisoli sp. nov., and Bacillus solitudinis sp. nov., isolated from saline-alkali soil.两株新的嗜碱菌，即解淀粉芽孢杆菌新种和孤立芽孢杆菌新种，从盐碱土壤中分离得到。
Extremophiles. 2019 Nov;23(6):759-764. doi: 10.1007/s00792-019-01127-2. Epub 2019 Sep 19.