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基于基因组的重新分类,将 Anoxybacillus karvacharensis Panosyan 等人归类为 Anoxybacillus kestanbolensis Dulger 等人的晚型异名;A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai 等人归类为 A. tengchongensis DSM 23211 Zhang 等人的晚型异名。

Genome-based reclassification of Anoxybacillus karvacharensis Panosyan et al. as a later heterotypic synonym of Anoxybacillus kestanbolensis Dulger et al. 2004; A. flavithermus subsp. yunnanensis CCTCC AB2010187 Dai et al. 2011 as a later heterotypic synonym of A. tengchongensis DSM 23211 Zhang et al. 2011.

机构信息

Department of Molecular Biology and Genetics, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey.

Department of Biology, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey.

出版信息

Arch Microbiol. 2022 Jun 29;204(7):439. doi: 10.1007/s00203-022-03070-x.

Abstract

In the present study, we attempted to clarify the taxonomic positions of Anoxybacillus karvacharensis K1, Anoxybacillus kestanbolensis NCIMB 13971, Anoxybacillus flavithermus subsp. yunnanensis CCTCC AB2010187, and Anoxybacillus tengchongensis DSM 23211 using whole-genome phylogenetic analysis. The genome sequence of A. kestanbolensis NCIMB13971 was not available in any database, so it was sequenced in this study. The 16S rRNA gene sequence obtained from the genome of A. kestanbolensis NCIMB13971 had 99.93% similarity with A. karvacharensis K1. The average nucleotide identity (ANI), average amino acid identity (AAI), and digital DNA-DNA hybridization (DDH) values between A. karvacharensis K1 and A. kestanbolensis NCIMB13971 and between A. flavithermus subsp. yunnanensis CCTCCAB 2010187 and A. tengchongensis DSM 23211 were greater than the threshold values for species demarcation. The present results indicate that A. karvacharensis K1 is a later heterotypic synonym of A. kestanbolensis NCIMB13971; A. flavithermus subsp. yunnanensis CCTCCAB 2010187 is a later heterotypic synonym of A. tengchongensis DSM 23211.

摘要

在本研究中,我们试图通过全基因组系统发育分析来阐明嗜冷芽孢杆菌 K1、卡法根博氏芽孢杆菌 NCIMB 13971、云南黄杆菌亚种 CCTCC AB2010187 和腾冲嗜冷芽孢杆菌 DSM 23211 的分类地位。卡法根博氏芽孢杆菌 NCIMB13971 的基因组序列在任何数据库中都不可用,因此本研究对其进行了测序。从卡法根博氏芽孢杆菌 NCIMB13971 基因组中获得的 16S rRNA 基因序列与嗜冷芽孢杆菌 K1 的相似度为 99.93%。嗜冷芽孢杆菌 K1 与卡法根博氏芽孢杆菌 NCIMB13971 以及云南黄杆菌亚种 CCTCCAB 2010187 与腾冲嗜冷芽孢杆菌 DSM 23211 之间的平均核苷酸同一性(ANI)、平均氨基酸同一性(AAI)和数字 DNA-DNA 杂交(DDH)值均大于物种划分的阈值。本研究结果表明,嗜冷芽孢杆菌 K1 是卡法根博氏芽孢杆菌 NCIMB13971 的晚型异名;云南黄杆菌亚种 CCTCCAB 2010187 是腾冲嗜冷芽孢杆菌 DSM 23211 的晚型异名。

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