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新型嗜堿放线菌种的比较基因组分析。

Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species .

机构信息

Heilongjiang Academy of Black Soil Conservation and Utilization, Beijing People's Republic of China.

State Key Laboratory of Desert and Oasis Ecology, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Beijing People's Republic of China.

出版信息

Pol J Microbiol. 2022 Sep 24;71(3):453-461. doi: 10.33073/pjm-2022-040. eCollection 2022 Sep 1.

DOI:10.33073/pjm-2022-040
PMID:36185029
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9608169/
Abstract

In the present study, a comparative genome analysis of the novel alkaliphilic actinobacterial with other members of the genus was performed. The genome size of members ranged from 2,188,008 to 3,676,111 bp. and members of the present study encode the essential glycolysis and pentose phosphate pathway genes. In addition, some members encode the crucial genes for Entner-Doudoroff pathways. Some members possess the genes responsible for sulfate/thiosulfate transport system permease protein/ ATP-binding protein and conversion of sulfate to sulfite. members also encode the genes for assimilatory nitrate reduction, nitrite reductase, and the urea cycle. All members have the genes to overcome environmental stress and produce secondary metabolites. The present study helps to understand and members' environmental adaptation and niches specificity based on their specific metabolic properties. Further, based on genome analysis, we propose reclassifying as a later heterotypic synonym of .

摘要

在本研究中,对新型嗜堿放线菌 与属内其他成员进行了比较基因组分析。本研究中 成员的基因组大小范围为 2,188,008 至 3,676,111 bp。 和本研究中的 成员编码必需的糖酵解和戊糖磷酸途径基因。此外,一些 成员编码 Entner-Doudoroff 途径的关键基因。一些 成员拥有负责硫酸盐/硫代硫酸盐运输系统渗透蛋白/ATP 结合蛋白以及将硫酸盐转化为亚硫酸盐的基因。 成员还编码同化硝酸盐还原、亚硝酸盐还原酶和尿素循环的基因。所有 成员都有克服环境压力和产生次生代谢物的基因。本研究有助于根据其特定的代谢特性了解 和 成员的环境适应和生态位特异性。此外,基于基因组分析,我们建议将 重新分类为 的后期异型同义词。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/eeade9f19d99/pjm-71-453-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/6315c1349bdf/pjm-71-453-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/0edbdcff6fca/pjm-71-453-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/5b281b48b5b1/pjm-71-453-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/eeade9f19d99/pjm-71-453-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/6315c1349bdf/pjm-71-453-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/0edbdcff6fca/pjm-71-453-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/5b281b48b5b1/pjm-71-453-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6ce1/9608169/eeade9f19d99/pjm-71-453-g004.jpg

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