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基于基因组将2011年Cihan等人鉴定的萨拉瓦特利无氧芽孢杆菌重新分类为2003年Belduz等人鉴定的贡内斯无氧芽孢杆菌的晚出异名。

Genome-based reclassification of Anoxybacillus salavatliensis Cihan et al. 2011 as a later heterotypic synonym of Anoxybacillus gonensis Belduz et al. 2003.

作者信息

Inan Bektas Kadriye, Guler Halil İbrahim, Canakci Sabriye, Belduz Ali Osman

机构信息

Department of Molecular Biology and Genetics, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey.

Department of Biology, Faculty of Science, Karadeniz Technical University, 61080, Trabzon, Turkey.

出版信息

Antonie Van Leeuwenhoek. 2023 May;116(5):415-423. doi: 10.1007/s10482-023-01813-4. Epub 2023 Feb 2.

Abstract

In the present study, we aim to clarify the taxonomic positions of Anoxybacillus salavatliensis DSM 22626 and Anoxybacillus gonensis G2 by using whole genome phylogenetic analysis, biochemical and chemotaxonomic characteristics. The genome sequences of A. salavatliensis DSM 22626 was not available in any database, so it was sequenced in this study. In phylogenetic trees drawn using whole genome sequences and 16S rRNA gene sequences, A. salavatliensis DSM 22626 and A. gonensis G2 clade together and showed high sequence similarity (99.3%) based on 16S rRNA gene. The average amino acid identity, average nucleotide identity and digital DNA-DNA hybridization values between A. salavatliensis DSM 22626 and A. gonensis G2 were found to be greater than the threshold values for species demarcation. Further, the phylogenomic analysis based on the core genome of the strains under study confirmed that A. salavatliensis DSM 22626 and A. gonensis G2 formed a monophyletic clade. Most phenotypic and chemotaxonomic features between both strains were almost identical except for a few exceptions. The present results show that A. salavatliensis DSM 22626 is a later heterotypic synonym of A. gonensis G2.

摘要

在本研究中,我们旨在通过全基因组系统发育分析、生化和化学分类特征来阐明萨拉瓦特利嗜热栖芽孢杆菌(Anoxybacillus salavatliensis)DSM 22626和戈内斯嗜热栖芽孢杆菌(Anoxybacillus gonensis)G2的分类地位。萨拉瓦特利嗜热栖芽孢杆菌DSM 22626的基因组序列在任何数据库中均不可获取,因此在本研究中对其进行了测序。在使用全基因组序列和16S rRNA基因序列绘制的系统发育树中,萨拉瓦特利嗜热栖芽孢杆菌DSM 22626和戈内斯嗜热栖芽孢杆菌G2聚为一个分支,基于16S rRNA基因显示出较高的序列相似性(99.3%)。发现萨拉瓦特利嗜热栖芽孢杆菌DSM 22626和戈内斯嗜热栖芽孢杆菌G2之间的平均氨基酸同一性、平均核苷酸同一性和数字DNA-DNA杂交值均大于物种划分的阈值。此外,基于所研究菌株核心基因组的系统基因组分析证实,萨拉瓦特利嗜热栖芽孢杆菌DSM 22626和戈内斯嗜热栖芽孢杆菌G2形成一个单系分支。除少数例外情况外,两株菌之间的大多数表型和化学分类特征几乎相同。目前的结果表明,萨拉瓦特利嗜热栖芽孢杆菌DSM 22626是戈内斯嗜热栖芽孢杆菌G2的晚出异名。

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