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解析高阶丝结构对分子药物结合与释放行为的影响

Unraveling the Impact of High-Order Silk Structures on Molecular Drug Binding and Release Behaviors.

作者信息

Wongpinyochit Thidarat, Vassileiou Antony D, Gupta Sukriti, Mushrif Samir H, Johnston Blair F, Seib F Philipp

机构信息

Strathclyde Institute of Pharmacy and Biomedical Sciences , University of Strathclyde , 161 Cathedral Street , Glasgow G4 0RE , United Kingdom.

Energy Research Institute @ NTU, Interdisciplinary Graduate School , Nanyang Technological University , 50 Nanyang Drive , Singapore 637553.

出版信息

J Phys Chem Lett. 2019 Aug 1;10(15):4278-4284. doi: 10.1021/acs.jpclett.9b01591. Epub 2019 Jul 18.

Abstract

Silk continues to amaze: over the past decade, new research threads have emerged that include the use of silk fibroin for advanced pharmaceutics, including its suitability for drug delivery. Despite this ongoing interest, the details of silk fibroin structures and their subsequent drug interactions at the molecular level remain elusive, primarily because of the difficulties encountered in modeling the silk fibroin molecule. Here, we generated an atomistic silk model containing amorphous and crystalline regions. We then exploited advanced well-tempered metadynamics simulations to generate molecular conformations that we subsequently exposed to classical molecular dynamics simulations to monitor both drug binding and release. Overall, this study demonstrated the importance of the silk fibroin primary sequence, electrostatic interactions, hydrogen bonding, and higher-order conformation in the processes of drug binding and release.

摘要

丝绸不断带来惊喜

在过去十年中,出现了新的研究方向,其中包括将丝素蛋白用于先进制药领域,以及其在药物递送方面的适用性。尽管人们对此持续关注,但丝素蛋白结构的细节及其在分子水平上与药物的相互作用仍不清楚,主要原因是在构建丝素蛋白分子模型时遇到了困难。在此,我们生成了一个包含无定形和结晶区域的原子级丝绸模型。然后,我们利用先进的自适应加权元动力学模拟来生成分子构象,随后将其暴露于经典分子动力学模拟中,以监测药物的结合和释放。总体而言,这项研究证明了丝素蛋白一级序列、静电相互作用、氢键以及高阶构象在药物结合和释放过程中的重要性。

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