Department of Bio and Brain Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, South Korea.
Center for Neuroscience Imaging Research, Institute for Basic Science, Suwon, South Korea.
Magn Reson Med. 2019 Dec;82(6):2299-2313. doi: 10.1002/mrm.27896. Epub 2019 Jul 18.
Nyquist ghost artifacts in echo planar imaging (EPI) are originated from phase mismatch between the even and odd echoes. However, conventional correction methods using reference scans often produce erroneous results especially in high-field MRI due to the nonlinear and time-varying local magnetic field changes. Recently, it was shown that the problem of ghost correction can be reformulated as k-space interpolation problem that can be solved using structured low-rank Hankel matrix approaches. Another recent work showed that data driven Hankel matrix decomposition can be reformulated to exhibit similar structures as deep convolutional neural network. By synergistically combining these findings, we propose a k-space deep learning approach that immediately corrects the phase mismatch without a reference scan in both accelerated and non-accelerated EPI acquisitions.
To take advantage of the even and odd-phase directional redundancy, the k-space data are divided into 2 channels configured with even and odd phase encodings. The redundancies between coils are also exploited by stacking the multi-coil k-space data into additional input channels. Then, our k-space ghost correction network is trained to learn the interpolation kernel to estimate the missing virtual k-space data. For the accelerated EPI data, the same neural network is trained to directly estimate the interpolation kernels for missing k-space data from both ghost and subsampling.
Reconstruction results using 3T and 7T in vivo data showed that the proposed method outperformed the image quality compared to the existing methods, and the computing time is much faster.
The proposed k-space deep learning for EPI ghost correction is highly robust and fast, and can be combined with acceleration, so that it can be used as a promising correction tool for high-field MRI without changing the current acquisition protocol.
回波平面成像(EPI)中的奈奎斯特鬼影伪影源自偶数回波和奇数回波之间的相位失配。然而,使用参考扫描的传统校正方法由于局部磁场的非线性和时变,通常会产生错误的结果,尤其是在高场 MRI 中。最近,已经表明,鬼影校正的问题可以重新表述为可以使用结构化低秩汉克尔矩阵方法解决的 k 空间内插问题。最近的另一项工作表明,数据驱动的汉克尔矩阵分解可以重新表述为表现出与深度卷积神经网络类似的结构。通过协同结合这些发现,我们提出了一种 k 空间深度学习方法,该方法可以立即在加速和非加速 EPI 采集过程中无需参考扫描即可校正相位失配。
为了利用偶数和奇数相位的方向冗余性,将 k 空间数据分为 2 个通道,配置有偶数和奇数相位编码。还通过将多通道 k 空间数据堆叠到附加的输入通道中,利用线圈之间的冗余性。然后,我们的 k 空间鬼影校正网络经过训练来学习插值核,以估计丢失的虚拟 k 空间数据。对于加速的 EPI 数据,使用相同的神经网络从鬼影和欠采样中直接估计丢失的 k 空间数据的插值核。
使用 3T 和 7T 体内数据的重建结果表明,与现有方法相比,该方法的图像质量得到了改善,计算时间也大大缩短。
提出的用于 EPI 鬼影校正的 k 空间深度学习方法具有高度的鲁棒性和快速性,并且可以与加速相结合,因此可以作为一种有前途的校正工具,用于高场 MRI 而无需改变当前的采集协议。