嗜麦芽窄食单胞菌菌株SVIA2的全基因组序列，该菌株从墨西哥塔巴斯科州受原油污染的土壤中分离得到。
Complete Genome Sequence of Stenotrophomonas maltophilia Strain SVIA2, Isolated from Crude Oil-Contaminated Soil in Tabasco, Mexico.
作者信息
Elufisan Temidayo Oluyomi, Lozano Luis, Bustos Patricia, Rodríguez-Luna Isabel Cristina, Sánchez-Varela Alejandro, Oyedara Omotayo Opemipo, Villalobos-López Miguel Ángel, Guo Xianwu
机构信息
Laboratorio de Biotecnología Genómica, Centro de Biotecnología Genómica, Instituto Politécnico Nacional, Mexico City, Mexico.
National Center for Technology Management (an agency of the Federal Ministry of Science and Technology), Obafemi Awolowo University, Ife, Osun State, Nigeria.
出版信息
Microbiol Resour Announc. 2019 Jul 25;8(30):e00529-19. doi: 10.1128/MRA.00529-19.
Abstract
strain SVIA2 was isolated from crude oil-contaminated soil from Tabasco, Mexico, and displayed a good potential for the degradation of polycyclic aromatic hydrocarbons (PAHs), using naphthalene, anthracene, phenanthridine, or biphenyl as the unique source of carbon. The SVIA2 genome contains essential genes involved in the degradation of PAHs.
摘要
菌株SVIA2从墨西哥塔巴斯科州受原油污染的土壤中分离得到，以萘、蒽、菲啶或联苯作为唯一碳源时，该菌株表现出良好的多环芳烃（PAHs）降解潜力。SVIA2基因组包含参与PAHs降解的必需基因。
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Genomics. 2017 Oct;109(5-6):374-382. doi: 10.1016/j.ygeno.2017.06.002. Epub 2017 Jun 15.
2
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets.IslandViewer 4：用于更大规模数据集的基因组岛的扩展预测。
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3
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