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通过硒 K 边高分辨率 X 射线吸收光谱揭示固氮酶 FeMoco 的局域电子结构。

Localized Electronic Structure of Nitrogenase FeMoco Revealed by Selenium K-Edge High Resolution X-ray Absorption Spectroscopy.

机构信息

Max Planck Institute for Chemical Energy Conversion , Stiftstr. 34-36 , D-45470 Mülheim an der Ruhr , Germany.

Division of Chemistry and Chemical Engineering , California Institute of Technology , Pasadena , California 91125 , United States.

出版信息

J Am Chem Soc. 2019 Aug 28;141(34):13676-13688. doi: 10.1021/jacs.9b06988. Epub 2019 Aug 15.

DOI:10.1021/jacs.9b06988
PMID:31356071
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6716209/
Abstract

The size and complexity of Mo-dependent nitrogenase, a multicomponent enzyme capable of reducing dinitrogen to ammonia, have made a detailed understanding of the FeMo cofactor (FeMoco) active site electronic structure an ongoing challenge. Selective substitution of sulfur by selenium in FeMoco affords a unique probe wherein local Fe-Se interactions can be directly interrogated via high-energy resolution fluorescence detected X-ray absorption spectroscopic (HERFD XAS) and extended X-ray absorption fine structure (EXAFS) studies. These studies reveal a significant asymmetry in the electronic distribution of the FeMoco, suggesting a more localized electronic structure picture than is typically assumed for iron-sulfur clusters. Supported by experimental small molecule model data in combination with time dependent density functional theory (TDDFT) calculations, the HERFD XAS data is consistent with an assignment of Fe2/Fe6 as an antiferromagnetically coupled diferric pair. HERFD XAS and EXAFS have also been applied to Se-substituted CO-inhibited MoFe protein, demonstrating the ability of these methods to reveal electronic and structural changes that occur upon substrate binding. These results emphasize the utility of Se HERFD XAS and EXAFS for selectively probing the local electronic and geometric structure of FeMoco.

摘要

Mo 依赖型氮酶是一种能够将氮气还原为氨的多组分酶,其体积和复杂性使得详细了解 FeMo 辅因子(FeMoco)活性位点的电子结构成为一个持续的挑战。在 FeMoco 中用硒选择性取代硫提供了一个独特的探针,其中可以通过高能分辨荧光探测 X 射线吸收光谱(HERFD XAS)和扩展 X 射线吸收精细结构(EXAFS)研究直接探究局部 Fe-Se 相互作用。这些研究揭示了 FeMoco 中电子分布的显著不对称性,表明其电子结构比通常假设的铁-硫簇更为局部化。实验小分子模型数据与时间相关密度泛函理论(TDDFT)计算相结合,支持了 HERFD XAS 数据的这一分配,表明 Fe2/Fe6 是反铁磁耦合的二铁对。HERFD XAS 和 EXAFS 也已应用于 Se 取代的 CO 抑制 MoFe 蛋白,证明了这些方法能够揭示底物结合时发生的电子和结构变化。这些结果强调了 Se HERFD XAS 和 EXAFS 用于选择性探测 FeMoco 局部电子和几何结构的有用性。

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Angew Chem Int Ed Engl. 2019 Jul 8;58(28):9373-9377. doi: 10.1002/anie.201901899. Epub 2019 Jun 18.
2
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J Am Chem Soc. 2018 Apr 25;140(16):5569-5578. doi: 10.1021/jacs.8b01825. Epub 2018 Apr 12.
3
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7
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9
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