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多研究验证数据驱动的疾病进展模型,以描述阿尔茨海默病生物标志物的演变。

Multi-study validation of data-driven disease progression models to characterize evolution of biomarkers in Alzheimer's disease.

机构信息

IRCCS Istituto Centro San Giovanni di Dio Fatebenefratelli, Brescia, Italy.

Department of Radiology and Nuclear Medicine, Amsterdam UMC Location VUmc, Amsterdam, The Netherlands.

出版信息

Neuroimage Clin. 2019;24:101954. doi: 10.1016/j.nicl.2019.101954. Epub 2019 Jul 23.

Abstract

Understanding the sequence of biological and clinical events along the course of Alzheimer's disease provides insights into dementia pathophysiology and can help participant selection in clinical trials. Our objective is to train two data-driven computational models for sequencing these events, the Event Based Model (EBM) and discriminative-EBM (DEBM), on the basis of well-characterized research data, then validate the trained models on subjects from clinical cohorts characterized by less-structured data-acquisition protocols. Seven independent data cohorts were considered totalling 2389 cognitively normal (CN), 1424 mild cognitive impairment (MCI) and 743 Alzheimer's disease (AD) patients. The Alzheimer's Disease Neuroimaging Initiative (ADNI) data set was used as training set for the constriction of disease models while a collection of multi-centric data cohorts was used as test set for validation. Cross-sectional information related to clinical, cognitive, imaging and cerebrospinal fluid (CSF) biomarkers was used. Event sequences obtained with EBM and DEBM showed differences in the ordering of single biomarkers but according to both the first biomarkers to become abnormal were those related to CSF, followed by cognitive scores, while structural imaging showed significant volumetric decreases at later stages of the disease progression. Staging of test set subjects based on sequences obtained with both models showed good linear correlation with the Mini Mental State Examination score (R = 0.866; R = 0.906). In discriminant analyses, significant differences (p-value ≤ 0.05) between the staging of subjects from training and test sets were observed in both models. No significant difference between the staging of subjects from the training and test was observed (p-value > 0.05) when considering a subset composed by 562 subjects for which all biomarker families (cognitive, imaging and CSF) are available. Event sequence obtained with DEBM recapitulates the heuristic models in a data-driven fashion and is clinically plausible. We demonstrated inter-cohort transferability of two disease progression models and their robustness in detecting AD phases. This is an important step towards the adoption of data-driven statistical models into clinical domain.

摘要

了解阿尔茨海默病病程中的生物和临床事件序列可以深入了解痴呆症的病理生理学,并有助于临床试验的受试者选择。我们的目标是基于特征明确的研究数据,为这些事件构建两个数据驱动的计算模型,即基于事件的模型(EBM)和判别式 EBM(DEBM),然后在具有较不结构化数据采集协议的临床队列中对训练有素的模型进行验证。考虑了七个独立的数据集,共包括 2389 名认知正常(CN)、1424 名轻度认知障碍(MCI)和 743 名阿尔茨海默病(AD)患者。阿尔茨海默病神经影像学倡议(ADNI)数据集被用作构建疾病模型的训练集,而一组多中心数据集则被用作验证的测试集。使用了与临床、认知、影像和脑脊液(CSF)生物标志物相关的横断面信息。EBM 和 DEBM 获得的事件序列在单个生物标志物的排序上存在差异,但根据首先出现异常的生物标志物,它们与 CSF 有关,其次是认知评分,而结构影像学在疾病进展的后期显示出明显的体积减少。基于两种模型获得的序列对测试集受试者进行分期,与简易精神状态检查评分(R=0.866;R=0.906)呈良好的线性相关性。在判别分析中,在两种模型中都观察到训练和测试集受试者分期之间存在显著差异(p 值≤0.05)。当考虑由 562 名具有所有生物标志物家族(认知、影像和 CSF)的受试者组成的子集时,观察到训练和测试集受试者的分期之间没有显著差异(p 值>0.05)。DEBM 获得的事件序列以数据驱动的方式再现启发式模型,并且具有临床意义。我们证明了两种疾病进展模型的队列间可转移性及其在检测 AD 阶段中的稳健性。这是将数据驱动的统计模型应用于临床领域的重要一步。

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