Guo Qiao-Mei, Wang Lin, Yu Wen-Jun, Qiao Li-Hua, Zhao Ming-Na, Hu Xiao-Meng, Sun Ya-Meng, Ni Sheng, Xu Yun-Hua, Lou Jia-Tao
Department of Laboratory Medicine, Shanghai Chest Hospital, Shanghai Jiao Tong University, Shanghai, China.
Bio-Chain Biological Technology Co., Ltd, Shanghai, China.
J Cancer. 2019 Jul 10;10(18):4341-4349. doi: 10.7150/jca.31326. eCollection 2019.
: The clinical utility of cell-free DNA (cfDNA) to assess mutations is increasing. However, there are limited studies determining their clinical validity and utility. The value of cfDNA assays in cancer management remains controversial. : In this study, we first evaluated the analytical performance of the ddPCR Lung cfDNA Assay. We next analyzed the concordance of the results with tissue amplification refractory mutation system PCR (ARMS-PCR) and plasma next-generation sequencing (NGS) genotyping. Finally, we assessed its clinical utility by exploring the association of cfDNA mutations with metastatic sites and the efficacy of EGFR-TKIs treatment. : The ddPCR Lung cfDNA Assay demonstrated a limit of blank of 1 droplet per reaction, an analytical specificity of 100%, and detection limit of 0.05%, 0.05%, and 0.1% for , , and , respectively. With tissue ARMS-PCR as a standard for comparison, the clinical sensitivity and specificity of ddPCR were 62.5% (15/24) and 100% (82/82) for , and 75.0% (15/20) and 94.2% (81/86) for , respectively. The ddPCR showed high concordance with NGS in determining cfDNA mutations. Patients with bone and/or brain metastasis showed a higher detection rate and mutant abundance of cfDNA mutations compared to those with other sites of metastasis. Moreover, EGFR-TKIs treatment was effective in patients with sensitive mutations in either plasma cfDNA or tumor tissue-derived DNA. : We validated in this study that the ddPCR Lung cfDNA Assay is reliable for detection of mutations in lung cancers, in terms of analytical performance, clinical validity and utility.
游离DNA(cfDNA)用于评估突变的临床效用正在增加。然而,确定其临床有效性和效用的研究有限。cfDNA检测在癌症管理中的价值仍存在争议。:在本研究中,我们首先评估了ddPCR肺癌cfDNA检测的分析性能。接下来,我们分析了结果与组织扩增阻滞突变系统PCR(ARMS-PCR)和血浆下一代测序(NGS)基因分型的一致性。最后,我们通过探索cfDNA突变与转移部位的关联以及EGFR-TKIs治疗的疗效来评估其临床效用。:ddPCR肺癌cfDNA检测显示每个反应的空白限为1个液滴,分析特异性为100%,对于、和的检测限分别为0.05%、0.05%和0.1%。以组织ARMS-PCR作为比较标准,ddPCR对于的临床敏感性和特异性分别为62.5%(15/24)和100%(82/82),对于的临床敏感性和特异性分别为75.0%(15/20)和94.2%(81/86)。ddPCR在确定cfDNA突变方面与NGS具有高度一致性。与其他转移部位的患者相比,骨和/或脑转移患者的cfDNA突变检测率和突变丰度更高。此外,如果血浆cfDNA或肿瘤组织来源的DNA中存在敏感突变,EGFR-TKIs治疗对患者有效。:我们在本研究中验证了ddPCR肺癌cfDNA检测在分析性能、临床有效性和效用方面对于检测肺癌中的突变是可靠的。