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食虫植物和 × 的质体基因组揭示了与寄生植物相似的进化模式。

Plastid Genomes of Carnivorous Plants and × Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants.

机构信息

Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, 119071 Moscow, Russia.

Lomonosov Moscow State University, 119991 Moscow, Russia.

出版信息

Int J Mol Sci. 2019 Aug 22;20(17):4107. doi: 10.3390/ijms20174107.

Abstract

Carnivorous plants have the ability to capture and digest small animals as a source of additional nutrients, which allows them to grow in nutrient-poor habitats. Here we report the complete sequences of the plastid genomes of two carnivorous plants of the order Caryophyllales, and × . The plastome of is repeat-rich and highly rearranged. It lacks NAD(P)H dehydrogenase genes, as well as and genes, and three essential tRNA genes. Intron losses are observed in some protein-coding and tRNA genes along with a pronounced reduction of RNA editing sites. Only six editing sites were identified by RNA-seq in plastid genome and at most conserved editing sites the conserved amino acids are already encoded at the DNA level. In contrast, the × plastome has a typical structure and gene content, except for pseudogenization of the gene. × and could represent different stages of evolution of the plastid genomes of carnivorous plants, resembling events observed in parasitic plants in the course of the switch from autotrophy to a heterotrophic lifestyle.

摘要

食虫植物具有捕捉和消化小动物作为额外营养源的能力,这使它们能够在营养贫瘠的栖息地中生长。在这里,我们报告了两个石竹目食虫植物属和 × 的质体基因组的完整序列。的质体基因组富含重复序列且高度重排。它缺乏 NAD(P)H 脱氢酶基因、和 基因以及三个必需的 tRNA 基因。在一些蛋白质编码基因和 tRNA 基因中观察到内含子丢失,同时 RNA 编辑位点明显减少。仅在 质体基因组中通过 RNA-seq 鉴定了六个编辑位点,并且在大多数保守编辑位点中,保守的氨基酸已经在 DNA 水平上编码。相比之下,× 的质体基因组具有典型的结构和基因组成,除了 基因的假基因化。× 和 可能代表了食虫植物质体基因组进化的不同阶段,类似于寄生植物在从自养到异养生活方式转变过程中观察到的事件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d10/6747624/d0448a00a5b3/ijms-20-04107-g001.jpg

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