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本文引用的文献

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Association of Genetically Enhanced Lipoprotein Lipase-Mediated Lipolysis and Low-Density Lipoprotein Cholesterol-Lowering Alleles With Risk of Coronary Disease and Type 2 Diabetes.载脂蛋白脂蛋白脂肪酶介导的脂肪分解和低密度脂蛋白胆固醇降低等位基因与冠心病和 2 型糖尿病风险的关联。
JAMA Cardiol. 2018 Oct 1;3(10):957-966. doi: 10.1001/jamacardio.2018.2866.
2
Genome-wide association analyses identify 143 risk variants and putative regulatory mechanisms for type 2 diabetes.全基因组关联分析鉴定出 143 个 2 型糖尿病风险变异和潜在调控机制。
Nat Commun. 2018 Jul 27;9(1):2941. doi: 10.1038/s41467-018-04951-w.
3
Human Genetics of Obesity and Type 2 Diabetes Mellitus: Past, Present, and Future.肥胖与 2 型糖尿病的人类遗传学:过去、现在和未来。
Circ Genom Precis Med. 2018 Jun;11(6):e002090. doi: 10.1161/CIRCGEN.118.002090.
4
Genomic atlas of the human plasma proteome.人类血浆蛋白质组基因组图谱。
Nature. 2018 Jun;558(7708):73-79. doi: 10.1038/s41586-018-0175-2. Epub 2018 Jun 6.
5
The MR-Base platform supports systematic causal inference across the human phenome.MR-Base 平台支持在人类表型全范围内进行系统因果推断。
Elife. 2018 May 30;7:e34408. doi: 10.7554/eLife.34408.
6
Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes.通过 2 型糖尿病编码变异精细映射来提高已验证靶点识别的准确性。
Nat Genet. 2018 Apr;50(4):559-571. doi: 10.1038/s41588-018-0084-1. Epub 2018 Apr 9.
7
Genotype-based recall to study metabolic effects of genetic variation: a pilot study of PPARG Pro12Ala carriers.基于基因型的召回研究遗传变异的代谢效应:PPARG Pro12Ala 携带者的初步研究。
Ups J Med Sci. 2017 Nov;122(4):234-242. doi: 10.1080/03009734.2017.1405127. Epub 2018 Jan 5.
8
Exome-wide association study of plasma lipids in >300,000 individuals.对超过30万人的血浆脂质进行全外显子组关联研究。
Nat Genet. 2017 Dec;49(12):1758-1766. doi: 10.1038/ng.3977. Epub 2017 Oct 30.
9
Connecting genetic risk to disease end points through the human blood plasma proteome.通过人类血浆蛋白质组将遗传风险与疾病终点联系起来。
Nat Commun. 2017 Feb 27;8:14357. doi: 10.1038/ncomms14357.
10
Screening for potential serum-based proteomic biomarkers for human type 2 diabetes mellitus using MALDI-TOF MS.使用基质辅助激光解吸电离飞行时间质谱筛选人2型糖尿病潜在的血清蛋白质组学生物标志物。
Proteomics Clin Appl. 2017 Mar;11(3-4). doi: 10.1002/prca.201600079. Epub 2016 Nov 30.

在糖尿病的因果途径研究中:一项使用来自横断面研究的蛋白质组学和基因分型数据的研究。

In search of causal pathways in diabetes: a study using proteomics and genotyping data from a cross-sectional study.

机构信息

Department of Medical Sciences, Uppsala University, UCR, Dag Hammarskjölds väg 38, SE-751 83, Uppsala, Sweden.

Department of Neurobiology, Care Sciences and Society, Division of Family Medicine and Primary Care, Karolinska Institute, Stockholm, Sweden.

出版信息

Diabetologia. 2019 Nov;62(11):1998-2006. doi: 10.1007/s00125-019-4960-8. Epub 2019 Aug 24.

DOI:10.1007/s00125-019-4960-8
PMID:31446444
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6805963/
Abstract

AIMS/HYPOTHESIS: The pathogenesis of type 2 diabetes is not fully understood. We investigated whether circulating levels of preselected proteins were associated with the outcome 'diabetes' and whether these associations were causal.

METHODS

In 2467 individuals of the population-based, cross-sectional EpiHealth study (45-75 years, 50% women), 249 plasma proteins were analysed by the proximity extension assay technique. DNA was genotyped using the Illumina HumanCoreExome-12 v1.0 BeadChip. Diabetes was defined as taking glucose-lowering treatment or having a fasting plasma glucose of ≥7.0 mmol/l. The associations between proteins and diabetes were assessed using logistic regression. To investigate causal relationships between proteins and diabetes, a bidirectional two-sample Mendelian randomisation was performed based on large, genome-wide association studies belonging to the DIAGRAM and MAGIC consortia, and a genome-wide association study in the EpiHealth study.

RESULTS

Twenty-six proteins were positively associated with diabetes, including cathepsin D, retinal dehydrogenase 1, α-L-iduronidase, hydroxyacid oxidase 1 and galectin-4 (top five findings). Three proteins, lipoprotein lipase, IGF-binding protein 2 and paraoxonase 3 (PON-3), were inversely associated with diabetes. Fourteen of the proteins are novel discoveries. The Mendelian randomisation study did not disclose any significant causal effects between the proteins and diabetes in either direction that were consistent with the relationships found between the protein levels and diabetes.

CONCLUSIONS/INTERPRETATION: The 29 proteins associated with diabetes are involved in several physiological pathways, but given the power of the study no causal link was identified for those proteins tested in Mendelian randomisation. Therefore, the identified proteins are likely to be biomarkers for type 2 diabetes, rather than representing causal pathways.

摘要

目的/假设:2 型糖尿病的发病机制尚未完全阐明。我们研究了预先选择的蛋白质的循环水平是否与结局 '糖尿病' 相关,以及这些关联是否具有因果关系。

方法

在基于人群的横断面 EpiHealth 研究中,对 2467 名 45-75 岁(50%为女性)个体的 249 种血浆蛋白进行了临近延伸测定技术分析。使用 Illumina HumanCoreExome-12 v1.0 BeadChip 对 DNA 进行基因分型。糖尿病的定义为服用降糖药物或空腹血糖≥7.0mmol/L。使用逻辑回归评估蛋白质与糖尿病之间的关联。为了研究蛋白质与糖尿病之间的因果关系,基于 DIAGRAM 和 MAGIC 联盟的大型全基因组关联研究以及 EpiHealth 研究中的全基因组关联研究,进行了双向两样本 Mendelian 随机化。

结果

26 种蛋白质与糖尿病呈正相关,包括组织蛋白酶 D、视网膜脱氢酶 1、α-L-艾杜糖苷酸酶、羟基酸氧化酶 1 和半乳糖凝集素-4(前五项发现)。三种蛋白质,脂蛋白脂肪酶、胰岛素样生长因子结合蛋白 2 和对氧磷酶 3(PON-3)与糖尿病呈负相关。其中 14 种蛋白质为新发现。Mendelian 随机化研究未发现蛋白质与糖尿病之间存在任何有意义的因果关系,这与蛋白质水平与糖尿病之间的关系不一致。

结论/解释:与糖尿病相关的 29 种蛋白质参与了几个生理途径,但考虑到研究的力量,在 Mendelian 随机化中未发现对测试的蛋白质有因果关系。因此,这些鉴定出的蛋白质可能是 2 型糖尿病的生物标志物,而不是代表因果途径。