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土耳其和伊朗感染家畜的比较基因分型

Comparative Genotyping of Infecting Livestock in Turkey and Iran.

作者信息

Barazesh Afshin, Sarkari Bahador, Sarısu Galip, Hami Mehdi, Mikaeili Fattaneh, Aydın Abdulalim, Ekici Abdurrahman, Ebrahimi Sepideh

机构信息

Bushehr University of Medical Sciences, Faculty of Medicine, Department of Microbiology and Parasitology, Bushehr, Iran

Shiraz University of Medical Sciences Faculty of Medicine, Department of Parasitology and Mycology, Shiraz, Iran

出版信息

Turkiye Parazitol Derg. 2019 Sep 10;43(3):123-129. doi: 10.4274/tpd.galenos.2019.6117.

Abstract

OBJECTIVE

contains a complex of different strains that represent diversity in the pattern of the life cycle and also their host types. So far 10 genotypes of this parasite have been identified, using molecular methods. The current study aimed to evaluate and compare the genotypic diversity of metacestodes from livestock of Turkey and Iran.

METHODS

A total of 90 livestock liver and lung organs infected with hydatid cyst from industrial slaughterhouses of Bonab Province in the East Azerbaijan Province in Iran (60 samples, including 30 sheep and 30 cattle) and Van Province in Turkey (30 samples, including 15 sheep and 15 cattle) were collected. DNA was extracted from the protoscolices or germinal layers and polymerase chain reaction (PCR) were utilized, targeting the partial mitochondrial cytochrome and genes. PCR products were isolated from the electrophoresis gels and sequenced. The sequences were compared with each other, as well as with those related available sequences in the GenBank, using the BioEdit software and the BLAST algorithm. Finally, the phylogenetic trees were constructed by comparing sequences of cox1 and nad1 fragments, using the MEGA7 software and the maximum likelihood method.

RESULTS

All samples sequenced from Iran corresponded to the genotype G1 (100%). Among the samples from Turkey, 15 samples (78.9%) were identified as G1 while only one sample (5.3%) corresponded to the genotype G3 and 3 isolates (15.8%) were defined as genotypes G1/G3. Five distinct haplotypes were determined within the examined isolates from sheep and cattle in both countries and all isolates clustered in one group. Phylogenetic analysis revealed that the intra-species genetic variations were 0.0-0.6% and 0.0-1.4% for cox1 and nad1, respectively.

CONCLUSION

The dominant genotype of sensu stricto of livestock in both countries was the G1 (sheep strain) genotype. Our findings indicate that the sheep-dog cycle is the leading cycle of in these two areas. Hence, adopting regional common policies and bilateral cooperation helps to control the disease in livestock as well as in human in these two regions. Further study is required to compare the genetic diversity of human isolates of in these two countries.

摘要

目的

包含一组不同的菌株,这些菌株代表了生命周期模式及其宿主类型的多样性。到目前为止,已使用分子方法鉴定出该寄生虫的10种基因型。本研究旨在评估和比较来自土耳其和伊朗家畜的多头蚴的基因型多样性。

方法

从伊朗东阿塞拜疆省博纳卜省(60个样本,包括30只绵羊和30头牛)和土耳其凡省(30个样本,包括15只绵羊和15头牛)的工业屠宰场收集了总共90个感染有包虫囊肿的家畜肝脏和肺脏器官。从原头蚴或生发层中提取DNA,并利用聚合酶链反应(PCR),以线粒体细胞色素和基因的部分片段为靶点。从电泳凝胶中分离出PCR产物并进行测序。使用BioEdit软件和BLAST算法,将这些序列相互比较,以及与GenBank中相关的可用序列进行比较。最后,使用MEGA7软件和最大似然法,通过比较cox1和nad1片段的序列构建系统发育树。

结果

从伊朗测序的所有样本均对应于基因型G1(100%)。在来自土耳其的样本中,15个样本(78.9%)被鉴定为G1,而只有1个样本(5.3%)对应于基因型G3,3个分离株(15.8%)被定义为基因型G1/G3。在两国的绵羊和牛的检测分离株中确定了5种不同的单倍型,所有分离株聚为一组。系统发育分析表明,cox1和nad1的种内遗传变异分别为0.0 - 0.6%和0.0 - 1.4%。

结论

两国家畜细粒棘球绦虫狭义种的优势基因型为G1(绵羊株)基因型。我们的研究结果表明,绵羊 - 犬循环是这两个地区细粒棘球绦虫的主要循环。因此,采取区域共同政策和双边合作有助于控制这两个地区家畜和人类的疾病。需要进一步研究来比较这两个国家人类细粒棘球绦虫分离株的遗传多样性。

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