Suppr超能文献

使用 R 构建基于 ISO 20046:2019 建议的带有多个供体数据集的荧光原位杂交(FISH)易位剂量反应校准曲线。

Construction of fluorescence in situ hybridization (FISH) translocation dose-response calibration curve with multiple donor data sets using R, based on ISO 20046:2019 recommendations.

机构信息

Department of Bioscience and Laboratory Medicine, Graduate School of Health Sciences, Hirosaki University, Hirosaki, Japan.

Department of Radiation Biology, Tohoku University School of Medicine, Sendai, Japan.

出版信息

Int J Radiat Biol. 2019 Dec;95(12):1668-1684. doi: 10.1080/09553002.2019.1664788. Epub 2019 Sep 24.

Abstract

Dose-response curve (DRC) generation is an important aspect in cytogenetic biodosimetry for accurate dose estimation for individuals suspected of prior irradiation. DRC construction with dicentric chromosomes after acute radiation is well-established following the publication of the IAEA EPR-Biodosimetry 2011 and ISO 19238:2014. However, the short half-life of dicentrics might not be suitable for retrospective dose estimation in radiation medical workers, radiation accident clean-up workers and the general public living in areas with higher than average amount of radiation. There is an urgent need for a chromosome translocation-based DRC, which is constructed based on translocation identification with fluorescence in situ hybridization (FISH). Despite several attempts to generate such a DRC in the past 40 years, no internationally standardized protocol has been developed until 2019, resulting in possible statistical uncertainties between DRCs previously generated. Using the recently published ISO 20049:2019, a DRC from five healthy donors (four males: 23, 35, 44, 55 years old, one female: 33 years old) was generated with age-adjusted translocations scored per cell equivalent (age-adjusted Tr/CE), using a modified R-script previously published in EPR-Biodosimetry, for Co gamma-ray doses of 0, 0.01, 0.02, 0.05, 0.1, 0.2, 0.5 and 1 Gy. The translocation data set used, based on probes used for chromosomes number 1, 2, and 4, was previously published by Abe et al. in 2018. The results output from R include the DRC coefficients (C, α, β), their -values, the goodness-of-fit Pearson's chi square value and its corresponding -value, and the DRC with its 95% confidence interval (CI). The equation of the DRC obtained was 0.0005 (±0.0001) +0.0178 (±0.0037) D + 0.0901 (±0.0054) D. DRC generated with averaged Tr/CE had a wider 95% CI than DRC generated with pooled Tr/CE, resulting in a 1.3-1.5 times increase in estimated dose range. No outliers between α coefficients from previously published modified DRCs and our DRC were detected with robust score. ISO 20046:2019 should be referenced for future FISH translocation-based DRC generation to ensure statistical reliability of dose estimation. Important considerations for FISH translocation-based DRC up to 1 Gy include scoring more than 2000 CE per dose, the use of multiple donors, age-adjustment of observed translocations, the use of a minimum of 5 dose points including 0 Gy, scoring of total simple translocations in only stable cells and the decision of using pooled or averaged age-adjusted Tr/CE.

摘要

剂量反应曲线(DRC)的生成是细胞遗传学生物剂量学中的一个重要方面,对于疑似先前受到照射的个体的准确剂量估计至关重要。在国际原子能机构 2011 年 EPR-生物剂量学和 ISO 19238:2014 发布后,用双着丝粒染色体在急性辐射后构建 DRC 已经得到很好的建立。然而,双着丝粒的半衰期较短,可能不适合对辐射医务人员、辐射事故清理人员和生活在辐射量高于平均水平地区的一般公众进行回溯性剂量估计。因此,迫切需要一种基于染色体易位的 DRC,该 DRC 是基于荧光原位杂交(FISH)鉴定易位构建的。尽管在过去的 40 年中,已经进行了几次生成这种 DRC 的尝试,但直到 2019 年才制定出国际标准化协议,导致之前生成的 DRC 之间可能存在统计不确定性。使用最近发布的 ISO 20049:2019,使用先前在 EPR-生物剂量学中发表的经过修改的 R 脚本,基于在每个细胞当量(年龄调整的 Tr/CE)中评分的年龄调整的易位,用五个健康供体(四个男性:23、35、44、55 岁,一个女性:33 岁)生成了 DRC,用于 Co 伽马射线剂量为 0、0.01、0.02、0.05、0.1、0.2、0.5 和 1 Gy。所使用的易位数据集基于用于染色体 1、2 和 4 的探针,由 Abe 等人于 2018 年在之前发表。R 输出的结果包括 DRC 系数(C、α、β)、它们的 P 值、拟合优度 Pearson 卡方值及其相应的 P 值,以及具有 95%置信区间(CI)的 DRC。获得的 DRC 方程为 0.0005(±0.0001)+0.0178(±0.0037)D+0.0901(±0.0054)D。与用平均 Tr/CE 生成的 DRC 相比,用平均 Tr/CE 生成的 DRC 具有更宽的 95%CI,导致估计剂量范围增加了 1.3-1.5 倍。使用稳健评分未检测到先前发表的经过修改的 DRC 的 α 系数之间的异常值与我们的 DRC。应参考 ISO 20046:2019 以确保剂量估计的统计可靠性,用于未来的 FISH 易位基础 DRC 生成。在 0 至 1 Gy 范围内,基于 FISH 易位的 DRC 的重要考虑因素包括对每个剂量评分超过 2000 个 CE,使用多个供体,观察到的易位的年龄调整,使用至少包括 0 Gy 的 5 个剂量点,仅在稳定细胞中评分总简单易位,以及决定使用平均或平均年龄调整的 Tr/CE。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验