Salinas-Garcia M Carmen, Plaza-Garrido Marina, Alba-Elena Daniel, Camara-Artigas Ana
Department of Chemistry and Physics, Agrifood Campus of International Excellence (ceiA3) and CIAMBITAL, University of Almería, Carretera de Sacramento s/n, 04120 Almería, Spain.
Acta Crystallogr F Struct Biol Commun. 2019 Nov 1;75(Pt 11):687-696. doi: 10.1107/S2053230X19013189. Epub 2019 Nov 5.
A new crystal form of lysozyme with a very low solvent content (26.35%) has been obtained in the orthorhombic space group P222 (with unit-cell parameters a = 30.04, b = 51.68, c = 61.53 Å). The lysozyme structure obtained from these crystals does not show the typical overall fold. Instead, major conformational changes take place in some elements of the secondary structure and in the hydrophobic core of the protein. At the end of the central α-helix (α2), Glu35 is usually buried in the catalytic site and shows an abnormally high pK value, which is key to the activity of the enzyme. The high pK value of this glutamate residue is favoured by the hydrophobic environment, particularly by its neighbour Trp108, which is important for structural stability and saccharide binding. In this new structure, Trp108 shows a 90° rotation of its side chain, which results in the rearrangement of the hydrophobic core. Conformational changes also result in the exposure of Glu35 to the solvent, which impairs the catalytic site by increasing the distance between Glu35 and Asp52 and lowering the pK value of the glutamate. Altogether, this new lysozyme structure reveals major conformational changes in the hydrophobic core and catalytic site that might play a role in the folding and bactericidal function of the protein.
已在正交空间群P222(晶胞参数a = 30.04、b = 51.68、c = 61.53 Å)中获得了一种溶剂含量极低(26.35%)的溶菌酶新晶型。从这些晶体中获得的溶菌酶结构并未显示出典型的整体折叠。相反,二级结构的某些元件和蛋白质的疏水核心发生了主要的构象变化。在中央α螺旋(α2)的末端,Glu35通常埋藏在催化位点并显示出异常高的pK值,这是酶活性的关键。该谷氨酸残基的高pK值受疏水环境的青睐,特别是受其邻位Trp108的影响,Trp108对结构稳定性和糖类结合很重要。在这种新结构中,Trp108的侧链旋转了90°,这导致疏水核心的重排。构象变化还导致Glu35暴露于溶剂中,这通过增加Glu35与Asp52之间的距离并降低谷氨酸的pK值而损害了催化位点。总之,这种新的溶菌酶结构揭示了疏水核心和催化位点的主要构象变化,这些变化可能在蛋白质的折叠和杀菌功能中起作用。