• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

如何为每位患者找到合适的药物?药物基因组学的进展与挑战。

How to find the right drug for each patient? Advances and challenges in pharmacogenomics.

作者信息

Kalamara Angeliki, Tobalina Luis, Saez-Rodriguez Julio

机构信息

RWTH Aachen University, Faculty of Medicine, Joint Research Centre for Computational Biomedicine, Aachen, Germany.

European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK.

出版信息

Curr Opin Syst Biol. 2018 Aug;10:53-62. doi: 10.1016/j.coisb.2018.07.001.

DOI:10.1016/j.coisb.2018.07.001
PMID:31763498
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6855262/
Abstract

Cancer is a highly heterogeneous disease with complex underlying biology. For these reasons, effective cancer treatment is still a challenge. Nowadays, it is clear that a cancer therapy that fits all the cases cannot be found, and as a result the design of therapies tailored to the patient's molecular characteristics is needed. Pharmacogenomics aims to study the relationship between an individual's genotype and drug response. Scientists use different biological models, ranging from cell lines to mouse models, as proxies for patients for preclinical and translational studies. The rapid development of "-omics" technologies is increasing the amount of features that can be measured in these models, expanding the possibilities of finding predictive biomarkers of drug response. Finding these relationships requires diverse computational approaches ranging from machine learning to dynamic modeling. Despite major advances, we are still far from being able to precisely predict drug efficacy in cancer models, let alone directly on patients. We believe that the new experimental techniques and computational approaches covered in this review will bring us closer to this goal.

摘要

癌症是一种具有复杂潜在生物学特性的高度异质性疾病。由于这些原因,有效的癌症治疗仍然是一项挑战。如今,很明显找不到适用于所有病例的癌症治疗方法,因此需要设计针对患者分子特征的个性化治疗方案。药物基因组学旨在研究个体基因型与药物反应之间的关系。科学家们使用从细胞系到小鼠模型等不同的生物学模型,作为临床前和转化研究中患者的替代物。“组学”技术的快速发展正在增加这些模型中可测量的特征数量,扩大了寻找药物反应预测生物标志物的可能性。找到这些关系需要从机器学习到动态建模等多种计算方法。尽管取得了重大进展,但我们距离能够在癌症模型中精确预测药物疗效仍有很大差距——更不用说直接在患者身上进行预测了。我们相信,本综述中涵盖的新实验技术和计算方法将使我们更接近这一目标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/e9dfa38a5e2c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/755ce092c652/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/059b91e72083/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/e9dfa38a5e2c/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/755ce092c652/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/059b91e72083/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dca0/6855262/e9dfa38a5e2c/gr3.jpg

相似文献

1
How to find the right drug for each patient? Advances and challenges in pharmacogenomics.如何为每位患者找到合适的药物?药物基因组学的进展与挑战。
Curr Opin Syst Biol. 2018 Aug;10:53-62. doi: 10.1016/j.coisb.2018.07.001.
2
Translational Metabolomics of Head Injury: Exploring Dysfunctional Cerebral Metabolism with Ex Vivo NMR Spectroscopy-Based Metabolite Quantification头部损伤的转化代谢组学:基于体外核磁共振波谱的代谢物定量分析探索脑代谢功能障碍
3
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
4
Overview of resistance to systemic therapy in patients with breast cancer.乳腺癌患者全身治疗耐药概述。
Adv Exp Med Biol. 2007;608:1-22. doi: 10.1007/978-0-387-74039-3_1.
5
Sepsis Care Pathway 2019.2019年脓毒症护理路径
Qatar Med J. 2019 Nov 7;2019(2):4. doi: 10.5339/qmj.2019.qccc.4. eCollection 2019.
6
Molecular profiling and companion diagnostics: where is personalized medicine in cancer heading?分子图谱分析与伴随诊断:癌症个性化医疗将走向何方?
Per Med. 2014 Nov;11(8):761-771. doi: 10.2217/pme.14.41.
7
Omics and Computational Modeling Approaches for the Effective Treatment of Drug-Resistant Cancer Cells.用于有效治疗耐药癌细胞的组学和计算建模方法。
Front Genet. 2021 Oct 6;12:742902. doi: 10.3389/fgene.2021.742902. eCollection 2021.
8
Tuberculosis结核病
9
The future of Cochrane Neonatal.考克兰新生儿协作网的未来。
Early Hum Dev. 2020 Nov;150:105191. doi: 10.1016/j.earlhumdev.2020.105191. Epub 2020 Sep 12.
10
Pharmacogenomics: Bench to bedside.药物基因组学:从 bench 到 bedside。 (注:bench 指实验室研究阶段,bedside 指临床应用阶段 ,准确完整翻译为:药物基因组学:从实验室到临床应用 )
Discov Med. 2005 Feb;5(25):30-6.

引用本文的文献

1
Machine learning-driven exploration of drug therapies for triple-negative breast cancer treatment.机器学习驱动的三阴性乳腺癌治疗药物疗法探索。
Front Mol Biosci. 2023 Aug 4;10:1215204. doi: 10.3389/fmolb.2023.1215204. eCollection 2023.
2
Ranking Breast Cancer Drugs and Biomarkers Identification Using Machine Learning and Pharmacogenomics.使用机器学习和药物基因组学对乳腺癌药物和生物标志物进行排名与鉴定
ACS Pharmacol Transl Sci. 2023 Feb 24;6(3):399-409. doi: 10.1021/acsptsci.2c00212. eCollection 2023 Mar 10.
3
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer.

本文引用的文献

1
A microfluidics platform for combinatorial drug screening on cancer biopsies.一种用于癌症活检的组合药物筛选的微流控平台。
Nat Commun. 2018 Jun 22;9(1):2434. doi: 10.1038/s41467-018-04919-w.
2
Validation of the prognostic value of the knowledge bank approach to determine AML prognosis in real life.知识库方法在现实生活中确定急性髓系白血病预后的预后价值验证。
Blood. 2018 Aug 23;132(8):865-867. doi: 10.1182/blood-2018-03-840348. Epub 2018 Jun 4.
3
CRISPR/Cas9 for cancer research and therapy.CRISPR/Cas9 用于癌症研究与治疗。
DRPreter:基于知识引导图神经网络和转换器的可解释抗癌药物反应预测
Int J Mol Sci. 2022 Nov 11;23(22):13919. doi: 10.3390/ijms232213919.
4
A review of deep learning applications in human genomics using next-generation sequencing data.深度学习在人类基因组学中应用的研究进展:利用下一代测序数据
Hum Genomics. 2022 Jul 25;16(1):26. doi: 10.1186/s40246-022-00396-x.
5
Reassessing pharmacogenomic cell sensitivity with multilevel statistical models.用多层次统计模型重新评估药物基因组细胞敏感性。
Biostatistics. 2023 Oct 18;24(4):901-921. doi: 10.1093/biostatistics/kxac010.
6
Predicting patient response with models trained on cell lines and patient-derived xenografts by nonlinear transfer learning.通过非线性迁移学习,利用细胞系和患者来源异种移植模型预测患者的反应。
Proc Natl Acad Sci U S A. 2021 Dec 7;118(49). doi: 10.1073/pnas.2106682118.
7
Machine Learning and Deep Learning for the Pharmacogenomics of Antidepressant Treatments.用于抗抑郁治疗药物基因组学的机器学习与深度学习
Clin Psychopharmacol Neurosci. 2021 Nov 30;19(4):577-588. doi: 10.9758/cpn.2021.19.4.577.
8
COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics.COVID19 药物库:从文献中挖掘文本以寻找潜在的 COVID19 疗法。
Nucleic Acids Res. 2021 Jan 8;49(D1):D1113-D1121. doi: 10.1093/nar/gkaa969.
9
Drug screening model meets cancer organoid technology.药物筛选模型与癌症类器官技术相结合。
Transl Oncol. 2020 Nov;13(11):100840. doi: 10.1016/j.tranon.2020.100840. Epub 2020 Aug 18.
10
Computational Methods for the Integrative Analysis of Genomics and Pharmacological Data.基因组学与药理学数据整合分析的计算方法
Front Oncol. 2020 Feb 27;10:185. doi: 10.3389/fonc.2020.00185. eCollection 2020.
Semin Cancer Biol. 2019 Apr;55:106-119. doi: 10.1016/j.semcancer.2018.04.001. Epub 2018 Apr 16.
4
Multi-omics analysis reveals neoantigen-independent immune cell infiltration in copy-number driven cancers.多组学分析揭示了拷贝数驱动的癌症中与新生抗原无关的免疫细胞浸润。
Nat Commun. 2018 Apr 3;9(1):1317. doi: 10.1038/s41467-018-03730-x.
5
Development of a new patient-derived xenograft humanised mouse model to study human-specific tumour microenvironment and immunotherapy.开发一种新的基于患者来源的异种移植人源化小鼠模型,以研究人类特异性肿瘤微环境和免疫治疗。
Gut. 2018 Oct;67(10):1845-1854. doi: 10.1136/gutjnl-2017-315201. Epub 2018 Mar 30.
6
Systematic Functional Annotation of Somatic Mutations in Cancer.癌症体细胞突变的系统功能注释。
Cancer Cell. 2018 Mar 12;33(3):450-462.e10. doi: 10.1016/j.ccell.2018.01.021.
7
Repurposing High-Throughput Image Assays Enables Biological Activity Prediction for Drug Discovery.重新利用高通量图像分析可用于药物发现中的生物活性预测。
Cell Chem Biol. 2018 May 17;25(5):611-618.e3. doi: 10.1016/j.chembiol.2018.01.015. Epub 2018 Mar 1.
8
Patient-derived organoids model treatment response of metastatic gastrointestinal cancers.患者来源的类器官模型可模拟转移性胃肠道癌症的治疗反应。
Science. 2018 Feb 23;359(6378):920-926. doi: 10.1126/science.aao2774.
9
Perturbation-response genes reveal signaling footprints in cancer gene expression.扰动响应基因揭示癌症基因表达中的信号印记。
Nat Commun. 2018 Jan 2;9(1):20. doi: 10.1038/s41467-017-02391-6.
10
Combination Cancer Therapy Can Confer Benefit via Patient-to-Patient Variability without Drug Additivity or Synergy.联合癌症疗法可通过患者间的个体差异产生疗效,而无需药物相加作用或协同作用。
Cell. 2017 Dec 14;171(7):1678-1691.e13. doi: 10.1016/j.cell.2017.11.009.