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用于连续纳米晶体学的可调节粘度油脂基质。

Viscosity-adjustable grease matrices for serial nanocrystallography.

机构信息

RIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo, 679-5148, Japan.

Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka, 565-0871, Japan.

出版信息

Sci Rep. 2020 Jan 28;10(1):1371. doi: 10.1038/s41598-020-57675-7.

Abstract

Serial femtosecond crystallography (SFX) has enabled determination of room temperature structures of proteins with minimum radiation damage. A highly viscous grease matrix acting as a crystal carrier for serial sample loading at a low flow rate of ~0.5 μl min was introduced into the beam path of X-ray free-electron laser. This matrix makes it possible to determine the protein structure with a sample consumption of less than 1 mg of the protein. The viscosity of the matrix is an important factor in maintaining a continuous and stable sample column from a nozzle of a high viscosity micro-extrusion injector for serial sample loading. Using conventional commercial grease (an oil-based, viscous agent) with insufficient control of viscosity in a matrix often gives an unexpectedly low viscosity, providing an unstable sample stream, with effects such as curling of the stream. Adjustment of the grease viscosity is extremely difficult since the commercial grease contains unknown compounds, which may act as unexpected inhibitors of proteins. This study introduces two novel grease matrix carriers comprising known compounds with a viscosity higher than that of conventional greases, to determine the proteinase K structure from nano-/microcrystals.

摘要

连续飞秒晶体学(SFX)使得在最小辐射损伤下确定室温下蛋白质结构成为可能。一种高粘性油脂基质被引入到 X 射线自由电子激光的光束路径中,作为用于以低流速(约 0.5 μl/min)连续加载样品的晶体载体。这种基质使得可以在消耗少于 1mg 蛋白质的情况下确定蛋白质结构。在用于连续样品加载的高粘度微挤出注射器的喷嘴中,基质的粘度是维持连续和稳定样品柱的重要因素。使用常规商业油脂(油基粘性剂)时,由于对基质中粘度的控制不足,往往会得到出乎意料的低粘度,从而提供不稳定的样品流,例如卷曲的流。由于商业油脂中含有未知的化合物,这些化合物可能会成为蛋白质的意外抑制剂,因此调整油脂粘度极其困难。本研究介绍了两种包含粘度高于常规油脂的已知化合物的新型油脂基质载体,以从纳米/微晶体中确定蛋白酶 K 的结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9417/6987181/62f477a97a56/41598_2020_57675_Fig1_HTML.jpg

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