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放牧肉牛中产超广谱β-内酰胺酶和AmpCβ-内酰胺酶的流行情况及分子特征

Prevalence and Molecular Characteristics of Extended-Spectrum and AmpC β-Lactamase Producing in Grazing Beef Cattle.

作者信息

Lee Shinyoung, Teng Lin, DiLorenzo Nicolas, Weppelmann Thomas A, Jeong Kwangcheol Casey

机构信息

Department of Animal Sciences, Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States.

Department of Animal Sciences, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, United States.

出版信息

Front Microbiol. 2020 Jan 9;10:3076. doi: 10.3389/fmicb.2019.03076. eCollection 2019.

Abstract

The emergence of extended-spectrum β-lactamase (ESBL) and AmpC β-lactamase producing represent a contemporary public health threat. ESBL and AmpC β-lactamase genes translocate between chromosomes and plasmids, facilitating rapid spread throughout the environment. In this study, ESBL/AmpC producing bacteria were isolated from beef cattle farms with seldom antibiotic use. Eleven farms out of 17 tested, had ESBL/AmpC producing in animals, soil, and forage samples. Fifty-nine CTX-M or CMY-2 positive isolates were further characterized with whole-genome sequencing. The isolates commonly carried CMY-2, TEM, or CTX-M genes, and over half encoded both CTX-M and TEM genes. Using comparative genomics, antimicrobial resistance genes from 12 classes of antimicrobial were identified and confirmed by antibiotic susceptibility test, revealing multidrug resistance against multiple classes of antibiotics. Virulence factors related to adherence, invasion, iron uptake, and bacterial secretion systems were shared by all isolates; some of which were identified as enteropathogenic . Phylogenetic analyses revealed a pattern of close genetic relatedness, suggesting that ESBL/AmpC producing were transmitted among farms as well as independent evolution within farms. Our results indicate that ESBL and AmpC β-lactamases prevail in food animal production system regardless antibiotic use and have the characteristics for zoonotic transmission.

摘要

产超广谱β-内酰胺酶(ESBL)和AmpCβ-内酰胺酶的细菌的出现是当代公共卫生威胁。ESBL和AmpCβ-内酰胺酶基因在染色体和质粒之间转移,促进了它们在环境中的快速传播。在本研究中,从很少使用抗生素的肉牛养殖场分离出产ESBL/AmpC的细菌。在17个测试养殖场中,有11个养殖场的动物、土壤和饲料样本中产ESBL/AmpC。对59株CTX-M或CMY-2阳性分离株进行了全基因组测序以进一步鉴定。这些分离株通常携带CMY-2、TEM或CTX-M基因,超过一半的分离株同时编码CTX-M和TEM基因。通过比较基因组学,鉴定出12类抗菌药物的耐药基因,并通过药敏试验进行了确认,揭示了对多类抗生素的多重耐药性。所有分离株都具有与黏附、侵袭、铁摄取和细菌分泌系统相关的毒力因子;其中一些被鉴定为致病性。系统发育分析揭示了一种密切的遗传相关性模式,表明产ESBL/AmpC的细菌在养殖场之间传播,也在养殖场内独立进化。我们的结果表明,无论是否使用抗生素,ESBL和AmpCβ-内酰胺酶在食用动物生产系统中普遍存在,并且具有人畜共患病传播的特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4b1a/6962307/4baed81b61e1/fmicb-10-03076-g001.jpg

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