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染色体构象捕获技术及其他:迈向染色体结构与功能的综合视角

Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function.

作者信息

McCord Rachel Patton, Kaplan Noam, Giorgetti Luca

机构信息

Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN, USA.

Department of Physiology, Biophysics and Systems Biology, Rappaport Faculty of Medicine, Technion - Israel Institute of Technology, Haifa, Israel.

出版信息

Mol Cell. 2020 Feb 20;77(4):688-708. doi: 10.1016/j.molcel.2019.12.021. Epub 2020 Jan 27.

DOI:10.1016/j.molcel.2019.12.021
PMID:32001106
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7134573/
Abstract

Rapidly developing technologies have recently fueled an exciting era of discovery in the field of chromosome structure and nuclear organization. In addition to chromosome conformation capture (3C) methods, new alternative techniques have emerged to study genome architecture and biological processes in the nucleus, often in single or living cells. This sets an unprecedented stage for exploring the mechanisms that link chromosome structure and biological function. Here we review popular as well as emerging approaches to study chromosome organization, focusing on the contribution of complementary methodologies to our understanding of structures revealed by 3C methods and their biological implications, and discuss the next technical and conceptual frontiers.

摘要

快速发展的技术最近推动了染色体结构和核组织领域令人兴奋的发现时代。除了染色体构象捕获(3C)方法外,新的替代技术也已出现,用于研究细胞核中的基因组结构和生物学过程,这些研究通常在单个或活细胞中进行。这为探索连接染色体结构和生物学功能的机制搭建了一个前所未有的平台。在这里,我们综述了研究染色体组织的常用方法以及新兴方法,重点关注互补方法对我们理解3C方法揭示的结构及其生物学意义的贡献,并讨论下一个技术和概念前沿。

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Cohesin and condensin extrude DNA loops in a cell cycle-dependent manner.黏合蛋白和凝聚蛋白以细胞周期依赖性的方式挤出 DNA 环。
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Ultrastructural Details of Mammalian Chromosome Architecture.哺乳动物染色体结构的超微结构细节
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Polymer model integrates imaging and sequencing to reveal how nanoscale heterochromatin domains influence gene expression.聚合物模型整合成像与测序技术以揭示纳米级异染色质结构域如何影响基因表达。
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