Department of Chemical Engineering, Dankook University, Yongin-si, 16890, South Korea.
Small. 2020 Mar;16(10):e1906598. doi: 10.1002/smll.201906598. Epub 2020 Feb 5.
All-atom molecular dynamics simulations of plasma proteins (human serum albumin, fibrinogen, immunoglobulin gamma-1 chain-C, complement C3, and apolipoprotein A-I) adsorbed onto 10 nm sized cationic, anionic, and neutral polystyrene (PS) particles in water are performed. In simulations of a single protein with a PS particle, proteins eventually bind to all PS particles, regardless of particle charge, in agreement with experiments showing the binding between anionic proteins and particles, which is further confirmed by calculating the binding free energies from umbrella sampling simulations. Simulations of mixtures of multiple proteins and a PS particle show the formation of the protein layer on the surface via the adsorption competition between proteins, which influences the binding affinity and structure of adsorbed proteins. In particular, diffusivities are much higher for proteins bound to the particle surface or to the boundary of the protein layer than for those bound to both the particle surface and other proteins, indicating the dependence of protein mobility on their positions in the layer. These findings help to explain in detail experimental observations regarding the replacement of plasma proteins at the early stage of corona formation and the difference in the binding strength of proteins in inner and outer protein-layers.
对吸附在 10nm 大小的阳离子、阴离子和中性聚苯乙烯(PS)颗粒上的血浆蛋白(人血清白蛋白、纤维蛋白原、免疫球蛋白γ-1 链-C、补体 C3 和载脂蛋白 A-I)进行全原子分子动力学模拟。在单个蛋白质与 PS 颗粒的模拟中,无论颗粒带何种电荷,蛋白质最终都会与所有 PS 颗粒结合,这与实验结果一致,实验表明阴离子蛋白与颗粒之间存在结合,通过对伞状采样模拟计算结合自由能进一步证实了这一点。模拟多种蛋白质和 PS 颗粒的混合物表明,通过蛋白质之间的吸附竞争,在表面形成蛋白质层,这影响了吸附蛋白质的结合亲和力和结构。特别是,与同时与颗粒表面和其他蛋白质结合的蛋白质相比,结合到颗粒表面或蛋白质层边界的蛋白质的扩散系数要高得多,这表明蛋白质的迁移率取决于它们在层中的位置。这些发现有助于详细解释关于在 corona 形成的早期阶段血浆蛋白取代以及内层和外层蛋白质层中蛋白质结合强度差异的实验观察。