Yin Yuelan, Doijad Swapnil, Wang Weiping, Lian Kai, Pan Xiuzhen, Koryciński Iwo, Hu Yachen, Tan Weijun, Ye Shuyang, Wang Zegang, Pan Zhiming, Chakraborty Trinad, Jiao Xin'an
Jiangsu Key Laboratory of Zoonosis, Yangzhou University, Yangzhou, China.
Key Laboratory of Prevention and Control of Biological Hazard Factors (Animal Origin) for Agrifood Safety and Quality, Ministry of Agriculture and Rural Affairs of the People's Republic of China, Yangzhou University, Yangzhou, China.
Foodborne Pathog Dis. 2020 Mar;17(3):215-227. doi: 10.1089/fpd.2019.2693. Epub 2019 Nov 11.
is a deadly foodborne pathogen, and infections can result in meningoencephalitis and sepsis with mortality rates of up to 30%. In this study, we performed comparative whole-genome analysis of 30 clinical isolates sequenced together with 32 previously sequenced clinical and food isolates from China. The data indicate that isolates belonging to the clonal complexes (CC) -1, -8, -9, -87, -121, and -155 are present in human clinical cases. The majority of isolates are from CC-87, 9, and 8 and overlap with those CCs previously reported on the basis of multilocus sequence typing for isolates from Chinese food products. Detailed genome analysis of isolates, representative of CCs in clinical and food products, revealed strong similarities both in their core- and accessory genomes indicating that they are highly related. When compared to genome sequences of isolates of a given CC worldwide, clinical isolates of China were distinct and clustered in unified clades. Our data indicate that epidemic clones of (CC-87, 9, and 8) with unusually high occurrence of plasmids are unique to China and suggest that common populations of clones are present in both clinical and food products in China.
是一种致命的食源性病原体,感染可导致脑膜脑炎和败血症,死亡率高达30%。在本研究中,我们对30株临床分离株进行了全基因组比较分析,并与之前测序的来自中国的32株临床和食品分离株一起进行了测序。数据表明,属于克隆复合体(CC)-1、-8、-9、-87、-121和-155的分离株存在于人类临床病例中。大多数分离株来自CC-87、9和8,并且与之前基于多位点序列分型报告的来自中国食品的分离株的那些CC重叠。对临床和食品中代表CC的分离株进行详细的基因组分析,发现在其核心基因组和辅助基因组中都有很强的相似性,表明它们高度相关。与全球给定CC的分离株基因组序列相比,中国的临床分离株是独特的,并聚集在统一的进化枝中。我们的数据表明,具有异常高质粒发生率的流行克隆(CC-87、9和8)是中国特有的,这表明中国临床和食品中存在共同的克隆群体。