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组织病理学图像中肾小球特征的数据。

Data for glomeruli characterization in histopathological images.

作者信息

Bueno Gloria, Gonzalez-Lopez Lucia, Garcia-Rojo Marcial, Laurinavicius Arvydas, Deniz Oscar

机构信息

VISILAB, Universidad de Castilla-La Mancha, Ciudad Real, Spain.

Pathology Department, Hospital Universitario de Ciudad Real, Ciudad Real, Spain.

出版信息

Data Brief. 2020 Feb 24;29:105314. doi: 10.1016/j.dib.2020.105314. eCollection 2020 Apr.

DOI:10.1016/j.dib.2020.105314
PMID:32154349
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7058889/
Abstract

The data presented in this article is part of the whole slide imaging (WSI) datasets generated in European project AIDPATH This data is also related to the research paper entitle "Glomerulosclerosis Identification in Whole Slide Images using Semantic Segmentation", published in Computer Methods and Programs in Biomedicine Journal [1]. In that article, different methods based on deep learning for glomeruli segmentation and their classification into normal and sclerotic glomerulous are presented and discussed. The raw data used is described and provided here. In addition, the detected glomeruli are also provided as individual image files. These data will encourage research on artificial intelligence (AI) methods, create and compare fresh algorithms, and measure their usability in quantitative nephropathology.

摘要

本文所呈现的数据是欧洲项目AIDPATH生成的全切片成像(WSI)数据集的一部分。该数据还与发表在《计算机方法与生物医学程序》杂志上的题为“使用语义分割在全切片图像中识别肾小球硬化”的研究论文相关[1]。在那篇文章中,介绍并讨论了基于深度学习的不同肾小球分割方法及其对正常和硬化性肾小球的分类。这里描述并提供了所使用的原始数据。此外,检测到的肾小球也作为单独的图像文件提供。这些数据将促进对人工智能(AI)方法的研究,创建并比较新的算法,并衡量它们在定量肾脏病理学中的可用性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02b6/7058889/9fd776d23673/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02b6/7058889/3a87da425f8c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02b6/7058889/9fd776d23673/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02b6/7058889/3a87da425f8c/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/02b6/7058889/9fd776d23673/gr2.jpg

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本文引用的文献

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Global Glomerulosclerosis in Kidney Biopsies With Differing Amounts of Cortex: A Clinical-Pathologic Correlation Study.不同皮质量肾脏活检中的全球肾小球硬化:一项临床病理相关性研究。
Kidney Med. 2019 Jul-Aug;1(4):153-161. doi: 10.1016/j.xkme.2019.05.004. Epub 2019 Jul 12.
2
Glomerulosclerosis identification in whole slide images using semantic segmentation.使用语义分割识别全切片图像中的肾小球硬化。
Comput Methods Programs Biomed. 2020 Feb;184:105273. doi: 10.1016/j.cmpb.2019.105273. Epub 2019 Dec 19.
3
Teaching Digital Pathology: The International School of Digital Pathology and Proposed Syllabus.
计算病理学:综述与未来发展方向
J Pathol Inform. 2024 Jan 14;15:100357. doi: 10.1016/j.jpi.2023.100357. eCollection 2024 Dec.
4
An image inpainting-based data augmentation method for improved sclerosed glomerular identification performance with the segmentation model EfficientNetB3-Unet.基于图像修复的数据增强方法,用于提高基于分割模型 EfficientNetB3-Unet 的硬化肾小球识别性能。
Sci Rep. 2024 Jan 10;14(1):1033. doi: 10.1038/s41598-024-51651-1.
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Artificial intelligence-assisted quantification and assessment of whole slide images for pediatric kidney disease diagnosis.人工智能辅助全切片图像定量和评估用于儿科肾脏疾病诊断。
Bioinformatics. 2024 Jan 2;40(1). doi: 10.1093/bioinformatics/btad740.
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Commun Biol. 2023 Jul 19;6(1):717. doi: 10.1038/s42003-023-04848-5.
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Artificial intelligence in renal pathology: Current status and future.人工智能在肾病理学中的应用:现状与未来。
Biomol Biomed. 2023 Mar 16;23(2):225-234. doi: 10.17305/bjbms.2022.8318.
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Glo-In-One: holistic glomerular detection, segmentation, and lesion characterization with large-scale web image mining.Glo-In-One:通过大规模网络图像挖掘进行整体肾小球检测、分割和病变特征描述。
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