Beijing Agro-Biotechnology Research Center, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, PR China.
School of Materials Science and Engineering, Beijing Institute of Technology, Beijing 100081, PR China.
Int J Syst Evol Microbiol. 2020 Mar;70(3):1457-1462. doi: 10.1099/ijsem.0.003673.
A facultatively anaerobic, Gram-stain-positive, spore-forming strain, 17-SMS-01, isolated from spent mushroom substrate in the Fangshan District, Beijing, PR China, was initially identified as a group species based on 16S rRNA gene sequences. Strain 17-SMS-01 had the highest sequence similarities to FSL W8-0169 (99.9 %), N35-10-2 (99.9 %), TD41 (99.9 %) and TD42 (99.9 %). However, the average nucleotide identity (ANI) and digital DNA-DNA hybridization (DDH) values between strain 17-SMS-01 and the most closely related species were less than the previously proposed cut-off values of 96 % (ANI) and 70 % (DDH) for differentiating species within the genus, suggesting that this strain represents a novel group species. The fatty acid profile of strain 17-SMS-01, which showed a predominance of iso-C and anteiso-C, supported the allocation of the strain to the genus . The predominant menaquinone was MK-7 (100%). The major polar lipids were diphosphatidylglycerol, phosphatidyl ethanolamine, phosphatidyl glycerol, an unidentified aminophospholiped and unidentified lipids. The DNA G+C content of the novel strain was 35.0 mol%. The results of physiological and biochemical tests also allowed the phenotypic differentiation of strain 17-SMS-01 from the most closely related recognized species. On the basis of the phylogenetic and phenotypic evidence, strain 17-SMS-01 represents a novel species, for which the name sp. nov. is proposed. Type strain of the novel species is 17-SMS-01 (=MCCC 1K03483=KCTC 33949).
一株兼性厌氧、革兰氏阳性、产芽孢的菌株 17-SMS-01 最初是根据 16S rRNA 基因序列被鉴定为一个群种,该菌株从中国北京房山区的废弃蘑菇基质中分离得到。菌株 17-SMS-01 与 FSL W8-0169(99.9%)、N35-10-2(99.9%)、TD41(99.9%)和 TD42(99.9%)的序列相似性最高。然而,菌株 17-SMS-01 与最密切相关的种之间的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(DDH)值均低于 96%(ANI)和 70%(DDH)的种间区分界限值,表明该菌株代表了一个新的群种。菌株 17-SMS-01 的脂肪酸图谱以 iso-C 和 anteiso-C 为主,支持该菌株被分配到属内。主要的menaquinone 是 MK-7(100%)。主要的极性脂是双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的氨基磷脂和未鉴定的脂类。新菌株的 DNA G+C 含量为 35.0mol%。生理生化试验的结果也允许将菌株 17-SMS-01 从最密切相关的公认种中进行表型区分。基于系统发育和表型证据,菌株 17-SMS-01 代表一个新的种,建议将其命名为. 新型种的模式菌株是 17-SMS-01(=MCCC 1K03483=KCTC 33949)。