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混合 DNA 折纸单层晶格缺陷的动力学。

Dynamics of lattice defects in mixed DNA origami monolayers.

机构信息

Technical and Macromolecular Chemistry, Paderborn University, Warburger Str. 100, 33098 Paderborn, Germany.

出版信息

Nanoscale. 2020 May 7;12(17):9733-9743. doi: 10.1039/d0nr01252a.

DOI:10.1039/d0nr01252a
PMID:32324191
Abstract

The surface-assisted hierarchical assembly of DNA nanostructures into regular lattices is not only a promising route toward the fabrication of molecular lithography masks over macroscopic surface areas, but also represents an intriguing model system that enables the direct real-time observation of interface-related dynamic phenomena such as adsorption, desorption, and diffusion that are hardly accessible in other lattice-forming systems. In this work, we employ in situ high-speed atomic force microscopy to investigate the development of mixed DNA origami monolayers consisting of DNA origami triangles with threefold symmetry in the presence of rectangular DNA origami impurities with fourfold symmetry. The dynamic formation and annealing of the resulting defects is monitored in dependence of the triangle-to-rectangle ratio and correlated with the achieved lattice order. We find that the overall order of the formed DNA origami monolayer is rather resilient with regard to the presence of impurities. We even find indications that the deliberate addition of impurities at low concentrations may lead to slightly improved lattice order, presumable because they facilitate the dynamic rearrangement of neighboring lattice triangles and thus aid the annealing of non-impurity defects. Deliberate doping of DNA origami lattices with differently shaped impurities during assembly may thus provide a route toward further enhancing lattice quality via impurity-assisted annealing of lattice defects.

摘要

表面辅助的 DNA 纳米结构的分级组装成规则晶格不仅是在宏观表面上制造分子光刻掩模的有前途的途径,而且还代表了一个有趣的模型系统,能够直接实时观察到其他晶格形成系统难以获得的界面相关动态现象,如吸附、解吸和扩散。在这项工作中,我们采用原位高速原子力显微镜研究了在存在具有四元对称的矩形 DNA 折纸杂质的情况下,由具有三元对称的 DNA 折纸三角形组成的混合 DNA 折纸单层的发展。监测了所得缺陷的动态形成和退火过程,这取决于三角形与矩形的比例,并与所达到的晶格有序性相关。我们发现,形成的 DNA 折纸单层的整体有序性对于杂质的存在具有相当的弹性。我们甚至发现,在低浓度下故意添加杂质可能会略微提高晶格有序性,这可能是因为它们促进了相邻晶格三角形的动态重排,从而有助于非杂质缺陷的退火。因此,在组装过程中故意用不同形状的杂质掺杂 DNA 折纸晶格可能提供了一种通过杂质辅助退火晶格缺陷来进一步提高晶格质量的途径。

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