Department of Computer Science & Electrical Engineering, West Virginia University, Morgantown, 26506, USA.
School of Public Health, Social and Behavioral Science, West Virginia University, Morgantown, 26506, USA.
Brief Bioinform. 2021 Mar 22;22(2):1767-1781. doi: 10.1093/bib/bbaa021.
Modern machine learning techniques (such as deep learning) offer immense opportunities in the field of human biological aging research. Aging is a complex process, experienced by all living organisms. While traditional machine learning and data mining approaches are still popular in aging research, they typically need feature engineering or feature extraction for robust performance. Explicit feature engineering represents a major challenge, as it requires significant domain knowledge. The latest advances in deep learning provide a paradigm shift in eliciting meaningful knowledge from complex data without performing explicit feature engineering. In this article, we review the recent literature on applying deep learning in biological age estimation. We consider the current data modalities that have been used to study aging and the deep learning architectures that have been applied. We identify four broad classes of measures to quantify the performance of algorithms for biological age estimation and based on these evaluate the current approaches. The paper concludes with a brief discussion on possible future directions in biological aging research using deep learning. This study has significant potentials for improving our understanding of the health status of individuals, for instance, based on their physical activities, blood samples and body shapes. Thus, the results of the study could have implications in different health care settings, from palliative care to public health.
现代机器学习技术(如深度学习)在人类生物衰老研究领域提供了巨大的机会。衰老是所有生物体都经历的一个复杂过程。虽然传统的机器学习和数据挖掘方法在衰老研究中仍然很流行,但它们通常需要特征工程或特征提取才能获得稳健的性能。显式特征工程代表了一个主要的挑战,因为它需要大量的领域知识。深度学习的最新进展提供了一种从复杂数据中提取有意义知识的范例转变,而无需执行显式特征工程。在本文中,我们回顾了应用深度学习进行生物年龄估计的最新文献。我们考虑了用于研究衰老的当前数据模态和应用的深度学习架构。我们确定了四种广泛的度量标准来量化生物年龄估计算法的性能,并基于这些标准评估当前方法。本文最后简要讨论了使用深度学习进行生物衰老研究的可能未来方向。这项研究有很大的潜力可以提高我们对个人健康状况的理解,例如,基于他们的身体活动、血液样本和体型。因此,研究结果可能会对不同的医疗保健环境产生影响,从姑息治疗到公共卫生。