• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

生物物理学。对《极端电场助力酮甾类异构酶活性位点催化作用》评论的回应

BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".

作者信息

Fried Stephen D, Boxer Steven G

机构信息

Department of Chemistry, Stanford University, Stanford, CA 94305-5080, USA.

出版信息

Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab1627. Epub 2015 Aug 27.

DOI:10.1126/science.aab1627
PMID:26315428
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5289113/
Abstract

Natarajan et al. and Chen and Savidge comment that comparing the electric field in ketosteroid isomerase's (KSI's) active site to zero overestimates the catalytic effect of KSI's electric field because the reference reaction occurs in water, which itself exerts a sizable electrostatic field. To compensate, Natarajan et al. argue that additional catalytic weight arises from positioning of the general base, whereas Chen and Savidge propose a separate contribution from desolvation of the general base. We note that the former claim is not well supported by published results, and the latter claim is intriguing but lacks experimental basis. We also take the opportunity to clarify some of the more conceptually subtle aspects of electrostatic catalysis.

摘要

纳塔拉詹等人以及陈和萨维奇评论称,将酮甾类异构酶(KSI)活性位点的电场与零进行比较会高估KSI电场的催化作用,因为参考反应发生在水中,而水本身会施加相当大的静电场。为了进行补偿,纳塔拉詹等人认为额外的催化权重源于一般碱的定位,而陈和萨维奇则提出一般碱去溶剂化会有单独的贡献。我们注意到前一种说法没有得到已发表结果的有力支持,而后一种说法很有趣但缺乏实验依据。我们还借此机会澄清了静电催化在概念上一些更为微妙的方面。

相似文献

1
BIOPHYSICS. Response to Comments on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".生物物理学。对《极端电场助力酮甾类异构酶活性位点催化作用》评论的回应
Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab1627. Epub 2015 Aug 27.
2
Extreme electric fields power catalysis in the active site of ketosteroid isomerase.极强电场助力酮甾体异构酶活性位点的催化作用。
Science. 2014 Dec 19;346(6216):1510-4. doi: 10.1126/science.1259802.
3
BIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".生物物理学。对“极端电场助力酮甾类异构酶活性位点的催化作用”的评论。
Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab0095. Epub 2015 Aug 27.
4
BIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".生物物理学. 评论“极端电场在酮固醇异构酶活性部位推动催化反应”。
Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab1584. Epub 2015 Aug 27.
5
A Critical Test of the Electrostatic Contribution to Catalysis with Noncanonical Amino Acids in Ketosteroid Isomerase.非典型氨基酸在酮固醇异构酶中对催化的静电贡献的关键检验。
J Am Chem Soc. 2016 Sep 14;138(36):11890-5. doi: 10.1021/jacs.6b06843. Epub 2016 Sep 1.
6
A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.预组织电场导致酮甾体异构酶催化反应中最小的几何重排。
J Am Chem Soc. 2020 Jun 3;142(22):9993-9998. doi: 10.1021/jacs.0c00383. Epub 2020 May 19.
7
QM/MM modelling of ketosteroid isomerase reactivity indicates that active site closure is integral to catalysis.QM/MM 建模研究酮甾体异构酶反应性表明活性位点的封闭是催化的必要条件。
FEBS J. 2013 Jul;280(13):3120-31. doi: 10.1111/febs.12158. Epub 2013 Feb 27.
8
Ketosteroid isomerase provides further support for the idea that enzymes work by electrostatic preorganization.酮甾体异构酶为酶通过静电预组织起作用的观点提供了进一步的支持。
Proc Natl Acad Sci U S A. 2010 Mar 2;107(9):4075-80. doi: 10.1073/pnas.0914579107. Epub 2010 Feb 11.
9
Determining the catalytic role of remote substrate binding interactions in ketosteroid isomerase.确定远程底物结合相互作用在酮甾体异构酶中的催化作用。
Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14271-5. doi: 10.1073/pnas.0901032106. Epub 2009 Aug 12.
10
Fluctuations of Electric Fields in the Active Site of the Enzyme Ketosteroid Isomerase.酶酮固醇异构酶活性部位的电场波动。
J Am Chem Soc. 2019 Aug 14;141(32):12487-12492. doi: 10.1021/jacs.9b05323. Epub 2019 Aug 2.

引用本文的文献

1
The Impact of Electric Fields on Processes at Electrode Interfaces.电场对电极界面过程的影响。
Chem Rev. 2025 Feb 12;125(3):1604-1628. doi: 10.1021/acs.chemrev.4c00487. Epub 2025 Jan 16.
2
A Preorganized Electric Field Leads to Minimal Geometrical Reorientation in the Catalytic Reaction of Ketosteroid Isomerase.预组织电场导致酮甾体异构酶催化反应中最小的几何重排。
J Am Chem Soc. 2020 Jun 3;142(22):9993-9998. doi: 10.1021/jacs.0c00383. Epub 2020 May 19.
3
Electric Fields and Enzyme Catalysis.电场与酶催化
Annu Rev Biochem. 2017 Jun 20;86:387-415. doi: 10.1146/annurev-biochem-061516-044432. Epub 2017 Mar 24.
4
Regulation and Plasticity of Catalysis in Enzymes: Insights from Analysis of Mechanochemical Coupling in Myosin.酶催化的调控与可塑性:来自肌球蛋白机械化学偶联分析的见解
Biochemistry. 2017 Mar 14;56(10):1482-1497. doi: 10.1021/acs.biochem.7b00016. Epub 2017 Mar 1.
5
Kemp Eliminase Activity of Ketosteroid Isomerase.酮类固醇异构酶的肯普消除酶活性。
Biochemistry. 2017 Jan 31;56(4):582-591. doi: 10.1021/acs.biochem.6b00762. Epub 2017 Jan 20.
6
Vibrational Stark Effects of Carbonyl Probes Applied to Reinterpret IR and Raman Data for Enzyme Inhibitors in Terms of Electric Fields at the Active Site.应用于根据活性位点处的电场重新解释酶抑制剂的红外和拉曼数据的羰基探针的振动斯塔克效应。
J Phys Chem B. 2016 Sep 15;120(36):9672-84. doi: 10.1021/acs.jpcb.6b08133. Epub 2016 Aug 31.
7
Regulation of protein-ligand binding affinity by hydrogen bond pairing.氢键配对调控蛋白-配体结合亲和力。
Sci Adv. 2016 Mar 25;2(3):e1501240. doi: 10.1126/sciadv.1501240. eCollection 2016 Mar.

本文引用的文献

1
BIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".生物物理学。对“极端电场助力酮甾类异构酶活性位点的催化作用”的评论。
Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab0095. Epub 2015 Aug 27.
2
BIOPHYSICS. Comment on "Extreme electric fields power catalysis in the active site of ketosteroid isomerase".生物物理学. 评论“极端电场在酮固醇异构酶活性部位推动催化反应”。
Science. 2015 Aug 28;349(6251):936. doi: 10.1126/science.aab1584. Epub 2015 Aug 27.
3
Measuring electric fields and noncovalent interactions using the vibrational stark effect.利用振动斯塔克效应测量电场和非共价相互作用。
Acc Chem Res. 2015 Apr 21;48(4):998-1006. doi: 10.1021/ar500464j. Epub 2015 Mar 23.
4
Extreme electric fields power catalysis in the active site of ketosteroid isomerase.极强电场助力酮甾体异构酶活性位点的催化作用。
Science. 2014 Dec 19;346(6216):1510-4. doi: 10.1126/science.1259802.
5
Experimental and computational mutagenesis to investigate the positioning of a general base within an enzyme active site.实验和计算突变研究酶活性位点中一个通用碱基的定位。
Biochemistry. 2014 Apr 22;53(15):2541-55. doi: 10.1021/bi401671t. Epub 2014 Apr 9.
6
Use of anion-aromatic interactions to position the general base in the ketosteroid isomerase active site.利用阴离子-芳环相互作用将广义碱定位在酮甾体异构酶活性部位。
Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11308-13. doi: 10.1073/pnas.1206710110. Epub 2013 Jun 24.
7
Site-specific measurement of water dynamics in the substrate pocket of ketosteroid isomerase using time-resolved vibrational spectroscopy.利用时间分辨振动光谱技术对酮固醇异构酶基质口袋中的水动力学进行位点特异性测量。
J Phys Chem B. 2012 Sep 20;116(37):11414-21. doi: 10.1021/jp305225r. Epub 2012 Sep 7.
8
Iterative approach to computational enzyme design.迭代式计算酶设计方法。
Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3790-5. doi: 10.1073/pnas.1118082108. Epub 2012 Feb 22.
9
Direct measurement of the protein response to an electrostatic perturbation that mimics the catalytic cycle in ketosteroid isomerase.直接测量蛋白质对模拟酮固醇异构酶催化循环的静电扰动的反应。
Proc Natl Acad Sci U S A. 2011 Oct 4;108(40):16612-7. doi: 10.1073/pnas.1113874108. Epub 2011 Sep 26.
10
An aspartate and a water molecule mediate efficient acid-base catalysis in a tailored antibody pocket.一个天冬氨酸和一个水分子在一个定制的抗体口袋中介导高效的酸碱催化作用。
Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18539-44. doi: 10.1073/pnas.0902700106. Epub 2009 Oct 21.