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利用新型基因座的高分辨率熔解分析高效区分 、 和 。

Efficient differentiation of , and by high-resolution melting analysis using a novel locus.

机构信息

State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, PR China.

出版信息

J Med Microbiol. 2020 Dec;69(12):1367-1372. doi: 10.1099/jmm.0.001205. Epub 2020 May 28.

Abstract

Accurate identification of species remains a challenge due to the complexities of taxonomy and insufficient discriminatory power of traditional techniques. We report the development of a molecular technique that utilizes real-time PCR-based high-resolution melting (HRM) analysis for differentiation of the most common species. Based on a novel intergenic region sequence, , and were clearly distinguished from one another by HRM analysis. The limit of detection of the HRM assay for purified spp. DNA was at least 10 fg. No false positives were observed for specificity testing of 20 non-target clinical samples. In comparison to established matrix-assisted laser desorption/ionization-time of flight MS, the HRM assay improved the identification of . Additionally, all the products of PCR were verified by direct sequencing. In conclusion, the developed molecular assay allows simultaneous detection and differentiation of , and with high sensitivity and specificity.

摘要

由于分类学的复杂性和传统技术的鉴别力不足,准确识别 种仍然是一个挑战。我们报告了一种分子技术的发展,该技术利用基于实时 PCR 的高分辨率熔解(HRM)分析来区分最常见的 种。基于一个新的种间基因序列,通过 HRM 分析可以清楚地区分 和 。HRM 分析对纯化的 spp. DNA 的检测限至少为 10 fg。在对 20 个非目标临床样本进行特异性测试时,没有观察到假阳性。与已建立的基质辅助激光解吸/电离时间飞行 MS 相比,HRM 分析提高了 的鉴定能力。此外,通过直接测序验证了所有 PCR 产物。总之,所开发的分子检测方法可实现高灵敏度和特异性的同时检测和区分 、 和 。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff96/7819362/bcce2bdab40b/jmm-69-1367-g001.jpg

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