Fulzele Sadanand, Sahay Bikash, Yusufu Ibrahim, Lee Tae Jin, Sharma Ashok, Kolhe Ravindra, Isales Carlos M
1Department of Medicine, Augusta University, Augusta, GA, USA.
2Center for Healthy Aging, Augusta University, Augusta, GA, USA.
Aging Dis. 2020 May 9;11(3):509-522. doi: 10.14336/AD.2020.0428. eCollection 2020 May.
The World health organization (WHO) declared Coronavirus disease 2019 (COVID-19) a global pandemic and a severe public health crisis. Drastic measures to combat COVID-19 are warranted due to its contagiousness and higher mortality rates, specifically in the aged patient population. At the current stage, due to the lack of effective treatment strategies for COVID-19 innovative approaches need to be considered. It is well known that host cellular miRNAs can directly target both viral 3'UTR and coding region of the viral genome to induce the antiviral effect. In this study, we did analysis of human miRNAs targeting SARS (4 isolates) and COVID-19 (29 recent isolates from different regions) genome and correlated our findings with aging and underlying conditions. We found 848 common miRNAs targeting the SARS genome and 873 common microRNAs targeting the COVID-19 genome. Out of a total of 848 miRNAs from SARS, only 558 commonly present in all COVID-19 isolates. Interestingly, 315 miRNAs are unique for COVID-19 isolates and 290 miRNAs unique to SARS. We also noted that out of 29 COVID-19 isolates, 19 isolates have identical miRNA targets. The COVID-19 isolates, Netherland (EPI_ISL_422601), Australia (EPI_ISL_413214), and Wuhan (EPI_ISL_403931) showed six, four, and four unique miRNAs targets, respectively. Furthermore, GO, and KEGG pathway analysis showed that COVID-19 targeting human miRNAs involved in various age-related signaling and diseases. Recent studies also suggested that some of the human miRNAs targeting COVID-19 decreased with aging and underlying conditions. GO and KEGG identified impaired signaling pathway may be due to low abundance miRNA which might be one of the contributing factors for the increasing severity and mortality in aged individuals and with other underlying conditions. Further, and studies are needed to validate some of these targets and identify potential therapeutic targets.
世界卫生组织(WHO)宣布2019冠状病毒病(COVID-19)为全球大流行疾病和严重的公共卫生危机。鉴于COVID-19的传染性和较高的死亡率,尤其是在老年患者群体中,有必要采取严厉措施来对抗它。在现阶段,由于缺乏针对COVID-19的有效治疗策略,需要考虑创新方法。众所周知,宿主细胞微小RNA(miRNA)可以直接靶向病毒基因组的3'非翻译区(UTR)和编码区,从而诱导抗病毒效应。在本研究中,我们分析了靶向严重急性呼吸综合征(SARS,4个分离株)和COVID-19(来自不同地区的29个近期分离株)基因组的人类miRNA,并将我们的研究结果与衰老和基础疾病相关联。我们发现有848个常见的miRNA靶向SARS基因组,873个常见的微小RNA靶向COVID-19基因组。在来自SARS的总共848个miRNA中,只有558个在所有COVID-19分离株中普遍存在。有趣的是,315个miRNA是COVID-19分离株所特有的,290个miRNA是SARS所特有的。我们还注意到,在29个COVID-19分离株中,有19个分离株具有相同的miRNA靶标。COVID-19分离株,荷兰(EPI_ISL_422601)、澳大利亚(EPI_ISL_413214)和武汉(EPI_ISL_403931)分别显示出6个、4个和4个独特的miRNA靶标。此外,基因本体(GO)和京都基因与基因组百科全书(KEGG)通路分析表明,靶向人类的COVID-19 miRNA涉及各种与年龄相关的信号传导和疾病。最近的研究还表明,一些靶向COVID-19的人类miRNA会随着衰老和基础疾病而减少。GO和KEGG鉴定出的受损信号通路可能是由于低丰度的miRNA,这可能是导致老年个体以及患有其他基础疾病的个体病情加重和死亡率增加的因素之一。此外,还需要进一步的研究来验证其中一些靶标并确定潜在的治疗靶点。