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通过锰氧化实现的细菌化能无机自养

Bacterial chemolithoautotrophy via manganese oxidation.

作者信息

Yu Hang, Leadbetter Jared R

机构信息

Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.

Division of Engineering and Applied Science, California Institute of Technology, Pasadena, CA, USA.

出版信息

Nature. 2020 Jul;583(7816):453-458. doi: 10.1038/s41586-020-2468-5. Epub 2020 Jul 15.

Abstract

Manganese is one of the most abundant elements on Earth. The oxidation of manganese has long been theorized-yet has not been demonstrated-to fuel the growth of chemolithoautotrophic microorganisms. Here we refine an enrichment culture that exhibits exponential growth dependent on Mn(II) oxidation to a co-culture of two microbial species. Oxidation required viable bacteria at permissive temperatures, which resulted in the generation of small nodules of manganese oxide with which the cells associated. The majority member of the culture-which we designate 'Candidatus Manganitrophus noduliformans'-is affiliated to the phylum Nitrospirae (also known as Nitrospirota), but is distantly related to known species of Nitrospira and Leptospirillum. We isolated the minority member, a betaproteobacterium that does not oxidize Mn(II) alone, and designate it Ramlibacter lithotrophicus. Stable-isotope probing revealed CO fixation into cellular biomass that was dependent upon Mn(II) oxidation. Transcriptomic analysis revealed candidate pathways for coupling extracellular manganese oxidation to aerobic energy conservation and autotrophic CO fixation. These findings expand the known diversity of inorganic metabolisms that support life, and complete a biogeochemical energy cycle for manganese that may interface with other major global elemental cycles.

摘要

锰是地球上含量最丰富的元素之一。长期以来,人们一直从理论上推测锰的氧化作用可为化能无机自养微生物的生长提供能量,但尚未得到证实。在此,我们对一种富集培养物进行了优化,该培养物在依赖锰(II)氧化的条件下呈现指数生长,最终得到了由两种微生物组成的共培养物。氧化过程需要在适宜温度下有活细菌参与,这导致生成了与细胞相关的小锰氧化物结节。该培养物中的主要成员——我们将其命名为“类结节状锰营养菌(Candidatus Manganitrophus noduliformans)”——隶属于硝化螺旋菌门(也称为硝化螺旋体门),但与已知的硝化螺旋菌属和钩端螺旋菌属物种亲缘关系较远。我们分离出了次要成员,一种不能单独氧化锰(II)的β-变形菌,并将其命名为嗜石拉姆利杆菌(Ramlibacter lithotrophicus)。稳定同位素探测显示,细胞生物质中的碳固定依赖于锰(II)的氧化。转录组分析揭示了将细胞外锰氧化与有氧能量守恒及自养碳固定相耦合的候选途径。这些发现扩展了已知的支持生命的无机代谢多样性,并完善了一个可能与其他主要全球元素循环相互作用的锰生物地球化学能量循环。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e51/7802741/75f6e9146e44/nihms-1591491-f0005.jpg

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