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对小刺 Dictyopanus pusillus 真菌酶提取物进行基因组测序和功能表征,为油棕残渣的木质纤维素预处理提供了一种有前途的替代方法。

Genome sequencing and functional characterization of a Dictyopanus pusillus fungal enzymatic extract offers a promising alternative for lignocellulose pretreatment of oil palm residues.

机构信息

Centre Armand-Frappier Santé Biotechnologie, Institut National de la Recherche Scientifique (INRS), Université du Québec, Laval, Canada.

Instituto de Biotecnología, Universidad Nacional de Colombia, Bogotá, Colombia.

出版信息

PLoS One. 2020 Jul 30;15(7):e0227529. doi: 10.1371/journal.pone.0227529. eCollection 2020.

Abstract

The pretreatment of biomass remains a critical requirement for bio-renewable fuel production from lignocellulose. Although current processes primarily involve chemical and physical approaches, the biological breakdown of lignin using enzymes and microorganisms is quickly becoming an interesting eco-friendly alternative to classical processes. As a result, bioprospection of wild fungi from naturally occurring lignin-rich sources remains a suitable method to uncover and isolate new species exhibiting ligninolytic activity. In this study, wild species of white rot fungi were collected from Colombian forests based on their natural wood decay ability and high capacity to secrete oxidoreductases with high affinity for phenolic polymers such as lignin. Based on high activity obtained from solid-state fermentation using a lignocellulose source from oil palm as matrix, we describe the isolation and whole-genome sequencing of Dictyopanus pusillus, a wild basidiomycete fungus exhibiting ABTS oxidation as an indication of laccase activity. Functional characterization of a crude enzymatic extract identified laccase activity as the main enzymatic contributor to fungal extracts, an observation supported by the identification of 13 putative genes encoding for homologous laccases in the genome. To the best of our knowledge, this represents the first report of an enzymatic extract exhibiting laccase activity in the Dictyopanus genera, offering means to exploit this species and its enzymes for the delignification process of lignocellulosic by-products from oil palm.

摘要

生物量的预处理仍然是从木质纤维素生产生物可再生燃料的关键要求。尽管目前的工艺主要涉及化学和物理方法,但使用酶和微生物对木质素进行生物分解正迅速成为经典工艺的一种有趣的环保替代方法。因此,从天然富含木质素的来源中对野生真菌进行生物勘探仍然是一种发现和分离具有木质素降解活性的新物种的合适方法。在这项研究中,根据其自然木材降解能力和高分泌能力,从哥伦比亚森林中收集了白腐真菌的野生种,这些能力能够分泌对木质素等酚类聚合物具有高亲和力的氧化还原酶。基于使用油棕作为基质的木质纤维素源进行固态发酵获得的高活性,我们描述了 Dictyopanus pusillus 的分离和全基因组测序,这是一种野生担子菌真菌,其 ABTS 氧化活性表明其具有漆酶活性。粗酶提取物的功能表征鉴定出漆酶活性是真菌提取物的主要酶贡献,这一观察结果得到了在基因组中鉴定出 13 个编码同源漆酶的假定基因的支持。据我们所知,这是 Dictyopanus 属中第一个报道具有漆酶活性的酶提取物的报告,为利用该物种及其酶进行油棕木质纤维素副产物的脱木质素过程提供了手段。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/033a/7392265/93d70b8a8640/pone.0227529.g001.jpg

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