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星球微生物:一个用于海洋微生物学的平台,用于发现和分析相互关联的组学和环境数据。

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data.

机构信息

Department of Biosystems Engineering, University of Arizona, Tucson, AZ, USA.

BIO5 Institute, University of Arizona, Tucson, AZ, USA.

出版信息

Nucleic Acids Res. 2021 Jan 8;49(D1):D792-D802. doi: 10.1093/nar/gkaa637.

Abstract

In recent years, large-scale oceanic sequencing efforts have provided a deeper understanding of marine microbial communities and their dynamics. These research endeavors require the acquisition of complex and varied datasets through large, interdisciplinary and collaborative efforts. However, no unifying framework currently exists for the marine science community to integrate sequencing data with physical, geological, and geochemical datasets. Planet Microbe is a web-based platform that enables data discovery from curated historical and on-going oceanographic sequencing efforts. In Planet Microbe, each 'omics sample is linked with other biological and physiochemical measurements collected for the same water samples or during the same sample collection event, to provide a broader environmental context. This work highlights the need for curated aggregation efforts that can enable new insights into high-quality metagenomic datasets. Planet Microbe is freely accessible from https://www.planetmicrobe.org/.

摘要

近年来,大规模的海洋测序工作为深入了解海洋微生物群落及其动态提供了更深入的认识。这些研究工作需要通过大型的跨学科和协作努力来获取复杂多样的数据集。然而,海洋科学界目前还没有一个统一的框架来将测序数据与物理、地质和地球化学数据集整合起来。Planet Microbe 是一个基于网络的平台,它可以从经过策划的历史和正在进行的海洋学测序工作中发现数据。在 Planet Microbe 中,每个“组学”样本都与为同一水样或在同一采样事件中收集的其他生物和生理化学测量值相关联,以提供更广泛的环境背景。这项工作强调了需要进行策划聚合工作,以能够对高质量的宏基因组数据集有新的见解。Planet Microbe 可从 https://www.planetmicrobe.org/ 免费获取。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5b7d/7778950/365cf1dcc5b3/gkaa637fig1.jpg

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