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基于深度学习模型集成的乳腺癌病理图像分类。

Breast Cancer Histopathology Image Classification Using an Ensemble of Deep Learning Models.

机构信息

eVida Research Group, University of Deusto, 48007 Bilbao, Spain.

Biokeralty Reseach Institute, 01510 Vitoria, Spain.

出版信息

Sensors (Basel). 2020 Aug 5;20(16):4373. doi: 10.3390/s20164373.

DOI:10.3390/s20164373
PMID:32764398
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7472736/
Abstract

Breast cancer is one of the major public health issues and is considered a leading cause of cancer-related deaths among women worldwide. Its early diagnosis can effectively help in increasing the chances of survival rate. To this end, biopsy is usually followed as a gold standard approach in which tissues are collected for microscopic analysis. However, the histopathological analysis of breast cancer is non-trivial, labor-intensive, and may lead to a high degree of disagreement among pathologists. Therefore, an automatic diagnostic system could assist pathologists to improve the effectiveness of diagnostic processes. This paper presents an ensemble deep learning approach for the definite classification of non-carcinoma and carcinoma breast cancer histopathology images using our collected dataset. We trained four different models based on pre-trained VGG16 and VGG19 architectures. Initially, we followed 5-fold cross-validation operations on all the individual models, namely, fully-trained VGG16, fine-tuned VGG16, fully-trained VGG19, and fine-tuned VGG19 models. Then, we followed an ensemble strategy by taking the average of predicted probabilities and found that the ensemble of fine-tuned VGG16 and fine-tuned VGG19 performed competitive classification performance, especially on the carcinoma class. The ensemble of fine-tuned VGG16 and VGG19 models offered sensitivity of 97.73% for carcinoma class and overall accuracy of 95.29%. Also, it offered an F1 score of 95.29%. These experimental results demonstrated that our proposed deep learning approach is effective for the automatic classification of complex-natured histopathology images of breast cancer, more specifically for carcinoma images.

摘要

乳腺癌是主要的公共卫生问题之一,被认为是全球女性癌症相关死亡的主要原因。早期诊断可以有效地提高生存率。为此,通常采用活检作为金标准方法,采集组织进行显微镜分析。然而,乳腺癌的组织病理学分析并不简单,需要大量的劳动力,并且可能导致病理学家之间存在高度分歧。因此,自动诊断系统可以帮助病理学家提高诊断过程的效率。本文提出了一种基于我们收集的数据集的集成深度学习方法,用于明确分类非癌和癌性乳腺癌组织病理学图像。我们基于预先训练的 VGG16 和 VGG19 架构训练了四个不同的模型。最初,我们对所有单个模型(即完全训练的 VGG16、微调的 VGG16、完全训练的 VGG19 和微调的 VGG19 模型)进行了 5 折交叉验证操作。然后,我们采用了一种集成策略,取预测概率的平均值,发现微调的 VGG16 和微调的 VGG19 的集成模型表现出了有竞争力的分类性能,特别是在癌性类别上。微调的 VGG16 和 VGG19 模型的集成提供了 97.73%的癌性类别敏感性和 95.29%的整体准确性。此外,它还提供了 95.29%的 F1 分数。这些实验结果表明,我们提出的深度学习方法对于自动分类乳腺癌复杂性质的组织病理学图像是有效的,特别是对于癌性图像。

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