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用于拟合简单到复杂受体反应数据的单一统一模型。

A single unified model for fitting simple to complex receptor response data.

机构信息

Department of Molecular and Cellular Pharmacology and Diabetes Research Institute, Miller School of Medicine, University of Miami, Miami, FL, 33136, USA.

出版信息

Sci Rep. 2020 Aug 7;10(1):13386. doi: 10.1038/s41598-020-70220-w.

Abstract

The fitting of complex receptor-response data where fractional response and occupancy do not match is challenging. They encompass important cases including (a) the presence of "receptor reserve" and/or partial agonism, (b) multiple responses assessed at different vantage points along a pathway, (c) responses that are different along diverging downstream pathways (biased agonism), and (d) constitutive activity. For these, simple models such as the well-known Clark or Hill equations cannot be used. Those that can, such as the operational (Black&Leff) model, do not provide a unified approach, have multiple nonintuitive parameters that are challenging to fit in well-defined manner, have difficulties incorporating binding data, and cannot be reduced or connected to simpler forms. We have recently introduced a quantitative receptor model (SABRE) that includes parameters for Signal Amplification (γ), Binding affinity (K), Receptor activation Efficacy (ε), and constitutive activity (ε). It provides a single equation to fit complex cases within a full two-state framework with the possibility of incorporating receptor occupancy data (i.e., experimental Ks). Simpler cases can be fit by using consecutively reduced forms obtained by constraining parameters to specific values, e.g., ε = 0: no constitutive activity, γ = 1: no amplification (E-type fitting), and ε = 1: no partial agonism (Clark equation). Here, a Hill-type extension is introduced (n ≠ 1), and simulated and experimental receptor-response data from simple to increasingly complex cases are fitted within the unified framework of SABRE with differently constrained parameters.

摘要

拟合分数反应和占据率不匹配的复杂受体-反应数据具有挑战性。这些数据涵盖了重要的情况,包括:(a)存在“受体储备”和/或部分激动剂,(b)在途径的不同有利位置评估多个反应,(c)沿着不同的下游途径反应不同(偏向激动剂),以及(d)组成活性。对于这些情况,不能使用简单的模型,如著名的克拉克或希尔方程。那些可以使用的模型,如操作性(Black&Leff)模型,不能提供统一的方法,具有多个非直观的参数,难以以明确定义的方式拟合,难以结合结合数据,并且不能简化或连接到更简单的形式。我们最近引入了一种定量受体模型(SABRE),它包括信号放大(γ)、结合亲和力(K)、受体激活效率(ε)和组成活性(ε)的参数。它提供了一个单一的方程,用于在全二态框架内拟合复杂情况,并有可能纳入受体占据数据(即实验 Ks)。更简单的情况可以通过将参数约束到特定值来拟合连续简化形式来拟合,例如,ε = 0:没有组成活性,γ = 1:没有放大(E 型拟合),和 ε = 1:没有部分激动剂(克拉克方程)。这里,引入了希尔型扩展(n ≠ 1),并在 SABRE 的统一框架内拟合了从简单到越来越复杂的情况的希尔型扩展和不同约束参数的模拟和实验受体-反应数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/293f/7414914/52132675a9d6/41598_2020_70220_Fig1_HTML.jpg

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