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钙调蛋白和钙调蛋白样基因的全基因组鉴定和表达分析,揭示并参与 的干旱胁迫响应

Genome-Wide Identification and Expression Analysis of Calmodulin and Calmodulin-like Genes, Revealing and Participating in Drought Stress in .

机构信息

State Key Laboratory of Subtropical Silviculture, School of Forestry & Biotechnology, Zhejiang A&F University, Lin'an, Hangzhou 311300, China.

出版信息

Int J Mol Sci. 2023 Dec 30;25(1):545. doi: 10.3390/ijms25010545.


DOI:10.3390/ijms25010545
PMID:38203715
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10778748/
Abstract

Calmodulin (CaM) and calmodulin-like (CML) proteins are major Ca sensors involved in the regulation of plant development and stress responses by converting Ca signals into appropriate cellular responses. However, characterization and expression analyses of / genes in the precious species, , remain limited. In this study, five and sixty genes were identified that only had EF-hand motifs with no other functional domains. The phylogenetic tree was clustered into 11 subgroups, including a unique clade of s. The s were intron-rich with four EF-hand motifs, whereas s had two to four EF-hands and were mostly intronless. s/s were unevenly distributed across the 12 chromosomes of and underwent purifying selection. Fragment duplication was the main driving force for the evolution of the PbCaM/CML gene family. Cis-acting element analysis indicated that s/s might be related to hormones, growth and development, and stress response. Expression analysis showed that s were generally highly expressed in five different tissues and under drought stress, whereas s showed specific expression patterns. The expression levels of 11 candidate s/s were responsive to ABA and MeJA, suggesting that these genes might act through multiple signaling pathways. The overexpression of / genes significantly increased the tolerance of yeast cells to drought stress. The identification and characterization of the CaM/CML gene family in laid the foundation for future functional studies of these genes.

摘要

钙调蛋白(CaM)和钙调蛋白样(CML)蛋白是主要的 Ca 传感器,通过将 Ca 信号转化为适当的细胞反应,参与植物发育和应激反应的调节。然而,珍稀物种 / 中的 / 基因的特征描述和表达分析仍然有限。在这项研究中,鉴定出了 5 个 PbCaM 和 60 个 PbCML 基因,它们仅具有 EF 手模体,没有其他功能域。系统发育树聚类为 11 个亚组,包括一个独特的 s 分支。s 富含内含子,具有 4 个 EF 手模体,而 s 具有 2 到 4 个 EF 手模体,且大多无内含子。s/s 在 / 的 12 条染色体上不均匀分布,并经历了纯化选择。片段复制是 PbCaM/CML 基因家族进化的主要驱动力。顺式作用元件分析表明,s/s 可能与激素、生长发育和应激反应有关。表达分析表明,s 在五种不同组织和干旱胁迫下通常高度表达,而 s 则表现出特定的表达模式。11 个候选 s/s 的表达水平对 ABA 和 MeJA 有响应,表明这些基因可能通过多个信号通路发挥作用。/ 基因的过表达显著提高了酵母细胞对干旱胁迫的耐受性。/ 在 / 中的鉴定和特征描述为这些基因的未来功能研究奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/c106de290e62/ijms-25-00545-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/1eb7fc586ba7/ijms-25-00545-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/aa6848bb09dd/ijms-25-00545-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/3e1a130bba26/ijms-25-00545-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/5f808465bc94/ijms-25-00545-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/6d4e8d0360ca/ijms-25-00545-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/8be9d422232d/ijms-25-00545-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/eb190cc130c5/ijms-25-00545-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/c3c7fa3b8ebc/ijms-25-00545-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/c106de290e62/ijms-25-00545-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/1eb7fc586ba7/ijms-25-00545-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/aa6848bb09dd/ijms-25-00545-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/3e1a130bba26/ijms-25-00545-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/5f808465bc94/ijms-25-00545-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/6d4e8d0360ca/ijms-25-00545-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/8be9d422232d/ijms-25-00545-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/eb190cc130c5/ijms-25-00545-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/c3c7fa3b8ebc/ijms-25-00545-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90a6/10778748/c106de290e62/ijms-25-00545-g009.jpg

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