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生物信息学分析磺基转移酶为硫酸化多糖的开发提供新见解。

Bioinformatic Characterization of Sulfotransferase Provides New Insights for the Exploitation of Sulfated Polysaccharides in .

机构信息

Department of Biology, University of Naples "Federico II", Via Cinthia, I-80126 Napoli, Italy.

出版信息

Int J Mol Sci. 2020 Sep 12;21(18):6681. doi: 10.3390/ijms21186681.

Abstract

is an unusual algal genus from (Chlorophyta, Bryopsidales). Species from this family produce a wide range of metabolites suitable for biotechnology applications. Among these, sulfated polysaccharides (SPs) are often highly desirable for pharmaceutical and nutraceutical applications. Here, we provide a classification of sulfotransferases from ; these important enzymes catalyze the nodal step for the biosynthesis of SPs. For this, we performed phylogenetic, genomic, expression analyses and prediction of the protein structure on sulfotransferases from . Sequences, domains and structures of sulfotransferases generally shared common characteristics with other plants and algae. However, we found an extensive duplication of sulfotransferase gene family, which is unique among the green algae. Expression analysis revealed specific transcript abundance in the pinnae and rachis of the alga. The unique genomic features could be utilized for the production of complex SPs, which require multiple and specific sulfation reactions. The expansion of this gene family in Caulerpaceae would have resulted in a number of proteins characterizing the unique SPs found in these algae. We provide a putative biosynthetic pathway of SPs, indicating the unique characteristics of this pathway in species. These data may help in the future selection of species for both commercial applications and genetic studies to improve the synthesis of valuable products from .

摘要

是一种来自 (Chlorophyta, Bryopsidales)的不寻常的藻类属。该科的物种产生广泛的代谢物,适合生物技术应用。在这些代谢物中,硫酸化多糖(SPs)通常是药物和营养保健品应用的理想选择。在这里,我们提供了 中硫基转移酶的分类;这些重要的酶催化 SPs 生物合成的关键步骤。为此,我们对 中的硫基转移酶进行了系统发育、基因组、表达分析和蛋白质结构预测。硫基转移酶的序列、结构域和结构通常与其他植物和藻类具有共同的特征。然而,我们发现硫基转移酶基因家族的广泛重复,这在绿藻中是独特的。表达分析显示出该藻类的羽片和羽轴中特定转录物的丰度。独特的基因组特征可用于生产复杂的 SPs,这些 SPs 需要多个和特定的硫酸化反应。在 Caulerpaceae 中该基因家族的扩张导致了许多蛋白质的特征,这些蛋白质是在这些藻类中发现的独特 SPs 的特征。我们提供了 SPs 的假定生物合成途径,表明了 中该途径的独特特征。这些数据可能有助于未来选择用于商业应用和遗传研究的 物种,以提高从 中合成有价值产品的能力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0ebd/7554865/6e57a5af35a5/ijms-21-06681-g001.jpg

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