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前生物合理性 RNA 激活与核酶催化连接兼容。

Prebiotically Plausible RNA Activation Compatible with Ribozyme-Catalyzed Ligation.

机构信息

Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152, Martinsried, Germany.

Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.

出版信息

Angew Chem Int Ed Engl. 2021 Feb 8;60(6):2952-2957. doi: 10.1002/anie.202010918. Epub 2020 Dec 10.

DOI:10.1002/anie.202010918
PMID:33128282
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7898671/
Abstract

RNA-catalyzed RNA ligation is widely believed to be a key reaction for primordial biology. However, since typical chemical routes towards activating RNA substrates are incompatible with ribozyme catalysis, it remains unclear how prebiotic systems generated and sustained pools of activated building blocks needed to form increasingly larger and complex RNA. Herein, we demonstrate in situ activation of RNA substrates under reaction conditions amenable to catalysis by the hairpin ribozyme. We found that diamidophosphate (DAP) and imidazole drive the formation of 2',3'-cyclic phosphate RNA mono- and oligonucleotides from monophosphorylated precursors in frozen water-ice. This long-lived activation enables iterative enzymatic assembly of long RNAs. Our results provide a plausible scenario for the generation of higher-energy substrates required to fuel ribozyme-catalyzed RNA synthesis in the absence of a highly evolved metabolism.

摘要

RNA 催化的 RNA 连接被广泛认为是原始生物学的关键反应。然而,由于典型的化学途径与核酶催化不兼容,因此尚不清楚前生物系统如何产生和维持激活的构建块池,这些构建块对于形成越来越大和复杂的 RNA 是必需的。在此,我们证明了在适用于发夹核酶催化的反应条件下,RNA 底物的原位激活。我们发现二氨基磷酸(DAP)和咪唑在冷冻水冰中从单磷酸前体中驱动 2',3'-环磷酸 RNA 单核苷酸和寡核苷酸的形成。这种长寿命的激活使长 RNA 的酶促组装得以迭代进行。我们的结果为在没有高度进化的代谢的情况下,为驱动核酶催化的 RNA 合成所需的高能底物的产生提供了一个合理的方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/b52300644ee1/ANIE-60-2952-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/80ae73560200/ANIE-60-2952-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/9aed50e192c3/ANIE-60-2952-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/7209592323c0/ANIE-60-2952-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/45605c9fde0f/ANIE-60-2952-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/b52300644ee1/ANIE-60-2952-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/80ae73560200/ANIE-60-2952-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/9aed50e192c3/ANIE-60-2952-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/7209592323c0/ANIE-60-2952-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/45605c9fde0f/ANIE-60-2952-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0058/7898671/b52300644ee1/ANIE-60-2952-g004.jpg

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Chembiochem. 2020 Dec 1;21(23):3359-3370. doi: 10.1002/cbic.202000335. Epub 2020 Sep 7.
2
In vitro selection of ribozyme ligases that use prebiotically plausible 2-aminoimidazole-activated substrates.体外筛选使用前生物合理的 2-氨基咪唑激活底物的核酶连接酶。
Proc Natl Acad Sci U S A. 2020 Mar 17;117(11):5741-5748. doi: 10.1073/pnas.1914367117. Epub 2020 Mar 2.
3
Continuous nonenzymatic cross-replication of DNA strands with activated DNA oligonucleotides.
J Am Chem Soc. 2024 Apr 3;146(13):8887-8894. doi: 10.1021/jacs.3c10813. Epub 2024 Mar 19.
4
Minimal RNA self-reproduction discovered from a random pool of oligomers.从随机的寡聚物池中发现了最小的RNA自我复制现象。
Chem Sci. 2023 Jun 20;14(28):7656-7664. doi: 10.1039/d3sc01940c. eCollection 2023 Jul 19.
5
One-pot chemical pyro- and tri-phosphorylation of peptides by using diamidophosphate in water.在水中使用二氨基磷酸对肽进行一锅法化学焦磷酸化和三磷酸化。
Chem Sci. 2022 Oct 31;13(46):13741-13747. doi: 10.1039/d2sc04160j. eCollection 2022 Nov 30.
6
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7
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Sci Adv. 2021 Oct 8;7(41):eabj7487. doi: 10.1126/sciadv.abj7487. Epub 2021 Oct 6.
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7
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