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N 点化学交换的 Carr-Purcell-Meiboom-Gill 弛豫弥散的代数表达式。

Algebraic expressions for Carr-Purcell-Meiboom-Gill relaxation dispersion for N-site chemical exchange.

机构信息

Department of Biochemistry and Molecular Biophysics, Columbia University, 630 West 168th Street, New York, NY 10032, United States.

Department of Molecular Genetics, Biochemistry and Microbiology, University of Cincinnati, Cincinnati, OH 45267, United States.

出版信息

J Magn Reson. 2020 Dec;321:106846. doi: 10.1016/j.jmr.2020.106846. Epub 2020 Oct 8.

DOI:10.1016/j.jmr.2020.106846
PMID:33128917
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8129722/
Abstract

The Carr-Purcell-Meiboom-Gill (CPMG) NMR relaxation dispersion experiment measures the effective relaxation rate constant during a train of spin-echo pulse sequence elements as a function of the echo time. The CPMG experiment is a powerful method for characterizing chemical and conformational dynamic processes, termed chemical and conformational exchange, on μs-ms time scales, comparable to the experimentally accessible echo times. Approximate theoretical expressions for the effective relaxation rate constant for N-site chemical exchange have been reported (H. Koss, M. Rance, and A. G. Palmer, Biochemistry 57, 4753-4763 (2018)). Expressions for the effective relaxation rate constant have been improved by using the Cayley-Hamilton theorem to obtain simple and accurate approximations of the average Liouvillian for the CPMG experiment. The improved accuracy of the results allows efficient analyses of experimental data. In addition, the relationship is clarified between the approach of Koss and coworkers and that of Jen (1978).

摘要

卡尔珀塞尔-米尔-格林(CPMG)NMR 弛豫弥散实验测量了在自旋回波脉冲序列元素的序列中作为回波时间函数的有效弛豫率常数。CPMG 实验是一种强大的方法,可用于在μs-ms 时间尺度上表征化学和构象动态过程,称为化学和构象交换,与实验可达到的回波时间相当。已经报道了用于 N 位化学交换的有效弛豫率常数的近似理论表达式(H. Koss、M. Rance 和 A. G. Palmer,Biochemistry 57, 4753-4763 (2018))。通过使用 Cayley-Hamilton 定理,获得了 CPMG 实验的平均 Liouvillian 的简单而准确的近似,从而改进了有效弛豫率常数的表达式。结果的准确性得到了提高,从而可以有效地分析实验数据。此外,还澄清了 Koss 及其同事的方法与 Jen(1978)的方法之间的关系。

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本文引用的文献

1
Chemical Exchange.化学交换
Methods Enzymol. 2019;615:177-236. doi: 10.1016/bs.mie.2018.09.028. Epub 2018 Dec 4.
2
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Biochemistry. 2018 Aug 7;57(31):4753-4763. doi: 10.1021/acs.biochem.8b00370. Epub 2018 Jul 30.
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General expressions for R relaxation for N-site chemical exchange and the special case of linear chains.N 位点化学交换的 R 弛豫的一般表达式以及线性链的特殊情况。
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Rotation operator propagators for time-varying radiofrequency pulses in NMR spectroscopy: applications to shaped pulses and pulse trains.核磁共振波谱学中时变射频脉冲的旋转算子传播子:在整形脉冲和脉冲序列中的应用
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An exact solution for R2,eff in CPMG experiments in the case of two site chemical exchange.在双位点化学交换情况下,CPMG实验中R2,eff的精确解。
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Fast and accurate fitting of relaxation dispersion data using the flexible software package GLOVE.使用灵活的软件包 GLOVE 快速准确地拟合弛豫弥散数据。
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A phase cycle scheme that significantly suppresses offset-dependent artifacts in the R2-CPMG 15N relaxation experiment.一种能显著抑制R2-CPMG 15N弛豫实验中与偏移相关伪影的相位循环方案。
J Magn Reson. 2004 Nov;171(1):25-36. doi: 10.1016/j.jmr.2004.06.021.
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Low-populated folding intermediates of Fyn SH3 characterized by relaxation dispersion NMR.通过弛豫分散核磁共振表征的Fyn SH3低丰度折叠中间体
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