Glowacki Robert W P, Martens Eric C
Department of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, Michigan, USA.
J Bacteriol. 2020 Nov 9;203(9). doi: 10.1128/JB.00481-20.
In order to persist, successful bacterial inhabitants of the human gut need to adapt to changing nutrient conditions, which are influenced by host diet and a variety of other factors. For members of the Bacteroidetes and several other phyla, this has resulted in diversification of a variety of enzyme-based systems that equip them to sense and utilize carbohydrate-based nutrients from host, diet, and bacterial origin. In this review, we focus first on human gut and describe recent findings regarding polysaccharide utilization loci (PULs) and the mechanisms of the multi-protein systems they encode, including their regulation and the expanding diversity of substrates that they target. Next, we highlight previously understudied substrates such as monosaccharides, nucleosides, and Maillard reaction products that can also affect the gut microbiota by feeding symbionts that possess specific systems for their metabolism. Since some pathogens preferentially utilize these nutrients, they may represent nutrient niches competed for by commensals and pathogens. Finally, we address recent work to describe nutrient acquisition mechanisms in other important gut species such as those belonging to the Gram-positive anaerobic phyla and , as well as the Because gut bacteria contribute to many aspects of health and disease, we showcase advances in the field of synthetic biology, which seeks to engineer novel, diet-controlled nutrient utilization pathways within gut symbionts to create rationally designed live therapeutics.
为了生存下去,人类肠道中的成功细菌居民需要适应不断变化的营养条件,这些条件受宿主饮食和多种其他因素影响。对于拟杆菌门和其他几个门的成员来说,这导致了各种基于酶的系统的多样化,使它们能够感知和利用来自宿主、饮食和细菌来源的碳水化合物类营养物质。在这篇综述中,我们首先聚焦于人类肠道,并描述关于多糖利用位点(PULs)及其编码的多蛋白系统机制的最新发现,包括它们的调控以及它们所靶向底物的不断扩大的多样性。接下来,我们强调以前研究较少的底物,如单糖、核苷和美拉德反应产物,它们也可以通过为具有特定代谢系统的共生菌提供养分来影响肠道微生物群。由于一些病原体优先利用这些营养物质,它们可能代表共生菌和病原体竞争的营养生态位。最后,我们阐述了最近的研究工作,以描述其他重要肠道物种(如属于革兰氏阳性厌氧门的物种以及……)中的营养获取机制,以及……因为肠道细菌在健康和疾病的许多方面都发挥作用,我们展示了合成生物学领域的进展,该领域旨在设计肠道共生菌中新型的、受饮食控制的营养利用途径,以创造经过合理设计的活疗法。