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可培养的、宿主特异性的共生体表现出多样化的多糖水解策略。

Cultivable, Host-Specific Symbionts Exhibit Diverse Polysaccharolytic Strategies.

机构信息

Department of Evolution, Ecology and Organismal Biology, The Ohio State University, Columbus, Ohio, USA.

Department of Microbiology, The Ohio State University, Columbus, Ohio, USA.

出版信息

Appl Environ Microbiol. 2020 Apr 1;86(8). doi: 10.1128/AEM.00091-20.

Abstract

Beneficial gut microbes can facilitate insect growth on diverse diets. The omnivorous American cockroach, (Insecta: Blattodea), thrives on a diet rich in plant polysaccharides and harbors a species-rich gut microbiota responsive to host diet. are among the most abundant taxa in and other cockroaches, based on cultivation-independent gut community profiling, and these potentially polysaccharolytic bacteria may contribute to host diet processing. Eleven isolates were cultivated from digestive tracts, and phylogenomic analyses suggest that they were new , , , and species distinct from those previously isolated from other insects, humans, and environmental sources. In addition, complete genomes were generated for each isolate, and polysaccharide utilization loci (PULs) and several non-PUL-associated carbohydrate-active enzyme (CAZyme)-coding genes that putatively target starch, pectin, and/or cellulose were annotated in each of the isolate genomes. Type IX secretion system (T9SS)- and CAZyme-coding genes tagged with the corresponding T9SS recognition and export C-terminal domain were observed in some isolates, suggesting that these CAZymes were deployed via non-PUL outer membrane translocons. Additionally, single-substrate growth and enzymatic assays confirmed genomic predictions that a subset of the and isolates could degrade starch, pectin, and/or cellulose and grow in the presence of these substrates as a single sugar source. Plant polysaccharides enrich diets, and many of these gut isolates are well equipped to exploit host dietary inputs and potentially contribute to gut community and host nutrient accessibility. Gut microbes are increasingly being recognized as critical contributors to nutrient accessibility in animals. The globally distributed omnivorous American cockroach () harbors many bacterial phyla (e.g., ) that are abundant in vertebrates. thrives on a highly diverse plant-enriched diet, making this insect a rich potential source of uncharacterized polysaccharolytic bacteria. We have cultivated, completely sequenced, and functionally characterized several novel species that are endemic to the gut, and many of these isolates can degrade simple and complex polysaccharides. Cultivation and genomic characterization of these isolates further enable deeper insight into how these taxa participate in polysaccharide metabolism and, more broadly, how they affect animal health and development.

摘要

有益的肠道微生物可以促进昆虫在不同的饮食中生长。杂食性的美洲大蠊(昆虫纲:蜚蠊目)在富含植物多糖的饮食中茁壮成长,其肠道微生物群落丰富多样,对宿主饮食有反应。基于非培养肠道群落分析,是 和其他蟑螂中最丰富的分类群之一,这些潜在的多糖分解细菌可能有助于宿主饮食的加工。从 的消化道中分离出 11 株 ,系统发育分析表明,它们是新的 、 、 和 物种,与先前从其他昆虫、人类和环境来源中分离出的物种不同。此外,还为每个分离株生成了完整的基因组,并注释了每个分离株基因组中潜在针对淀粉、果胶和/或纤维素的多糖利用基因座 (PUL) 和几种非 PUL 相关的碳水化合物活性酶 (CAZyme) 编码基因。在一些分离株中观察到带有相应 T9SS 识别和外膜转运 C 端结构域的 T9SS 编码基因和 CAZyme 编码基因,表明这些 CAZymes 通过非 PUL 外膜转运体进行部署。此外,单一底物生长和酶分析实验证实了部分 和 分离株可以降解淀粉、果胶和/或纤维素,并可以在这些底物作为单一糖源存在的情况下生长的基因组预测。植物多糖使 的饮食更加丰富,其中许多肠道分离株能够充分利用宿主的饮食输入,并可能有助于肠道群落和宿主营养物质的可及性。肠道微生物越来越被认为是动物营养物质可及性的关键贡献者。分布广泛的杂食性美洲大蠊()拥有许多在脊椎动物中丰富的细菌门(例如 )。在富含植物的多样化饮食中茁壮成长,使这种昆虫成为尚未被描述的多糖分解细菌的丰富潜在来源。我们已经培养、完全测序并功能表征了几种新的 物种,这些物种是 的肠道特有种,其中许多分离株可以降解简单和复杂的多糖。这些 分离株的培养和基因组特征分析进一步深入了解了这些类群如何参与多糖代谢,以及更广泛地,它们如何影响动物的健康和发育。

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