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基于外部验证的自动机器学习算法在常规 MRI 上对低级别和高级别肾细胞癌的鉴别诊断。

Differentiation of low and high grade renal cell carcinoma on routine MRI with an externally validated automatic machine learning algorithm.

机构信息

Department of Diagnostic Imaging, Rhode Island Hospital, Alpert Medical School of Brown University, Providence, RI, 02905, USA.

Department of Radiology, The Second Xiangya Hospital, Central South University, Changsha, China.

出版信息

Sci Rep. 2020 Nov 11;10(1):19503. doi: 10.1038/s41598-020-76132-z.

Abstract

Pre-treatment determination of renal cell carcinoma aggressiveness may help guide clinical decision-making. We aimed to differentiate low-grade (Fuhrman I-II) from high-grade (Fuhrman III-IV) renal cell carcinoma using radiomics features extracted from routine MRI. 482 pathologically confirmed renal cell carcinoma lesions from 2008 to 2019 in a multicenter cohort were retrospectively identified. 439 lesions with information on Fuhrman grade from 4 institutions were divided into training and test sets with an 8:2 split for model development and internal validation. Another 43 lesions from a separate institution were set aside for independent external validation. The performance of TPOT (Tree-Based Pipeline Optimization Tool), an automatic machine learning pipeline optimizer, was compared to hand-optimized machine learning pipeline. The best-performing hand-optimized pipeline was a Bayesian classifier with Fischer Score feature selection, achieving an external validation ROC AUC of 0.59 (95% CI 0.49-0.68), accuracy of 0.77 (95% CI 0.68-0.84), sensitivity of 0.38 (95% CI 0.29-0.48), and specificity of 0.86 (95% CI 0.78-0.92). The best-performing TPOT pipeline achieved an external validation ROC AUC of 0.60 (95% CI 0.50-0.69), accuracy of 0.81 (95% CI 0.72-0.88), sensitivity of 0.12 (95% CI 0.14-0.30), and specificity of 0.97 (95% CI 0.87-0.97). Automated machine learning pipelines can perform equivalent to or better than hand-optimized pipeline on an external validation test non-invasively predicting Fuhrman grade of renal cell carcinoma using conventional MRI.

摘要

术前确定肾细胞癌的侵袭性可能有助于指导临床决策。我们旨在使用从常规 MRI 提取的放射组学特征来区分低级别(Fuhrman I-II)和高级别(Fuhrman III-IV)肾细胞癌。回顾性地在一个多中心队列中确定了 2008 年至 2019 年的 482 例经病理证实的肾细胞癌病变。在来自 4 个机构的 Fuhrman 分级信息的 439 个病变中,采用 8:2 分割进行模型开发和内部验证。另一个来自单独机构的 43 个病变被保留用于独立外部验证。比较了自动机器学习管道优化工具(Tree-Based Pipeline Optimization Tool,TPOT)的性能,该工具是一种自动机器学习管道优化器,与手动优化的机器学习管道相比。表现最好的手动优化管道是贝叶斯分类器与 Fischer 评分特征选择,在外部验证 ROC AUC 为 0.59(95%CI 0.49-0.68),准确率为 0.77(95%CI 0.68-0.84),灵敏度为 0.38(95%CI 0.29-0.48),特异性为 0.86(95%CI 0.78-0.92)。表现最好的 TPOT 管道在外部验证 ROC AUC 为 0.60(95%CI 0.50-0.69),准确率为 0.81(95%CI 0.72-0.88),灵敏度为 0.12(95%CI 0.14-0.30),特异性为 0.97(95%CI 0.87-0.97)。自动机器学习管道可以在外部验证测试中表现得与手动优化管道一样好,甚至更好,非侵入性地使用常规 MRI 预测肾细胞癌的 Fuhrman 分级。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/618e/7658976/7f963c2f8648/41598_2020_76132_Fig1_HTML.jpg

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