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DPL:一个关于肽配体序列、结构、来源和功能的综合数据库。

DPL: a comprehensive database on sequences, structures, sources and functions of peptide ligands.

机构信息

Henan Key Laboratory of Animal Immunology, Henan Academy of Agricultural Sciences, 116# Huayuan Road, Zhengzhou, Henan Province, 450002, China.

College of Food Science and Technology, Henan Agricultural University, 63#Agricultural Road, Zhengzhou, Henan Province, 450000, PR China.

出版信息

Database (Oxford). 2020 Nov 20;2020. doi: 10.1093/database/baaa089.

Abstract

DPL (http://www.peptide-ligand.cn/) is a comprehensive database of peptide ligand (DPL). DPL1.0 holds 1044 peptide ligand entries and provides references for the study of the polypeptide platform. The data were collected from PubMed-NCBI, PDB, APD3, CAMPR3, etc. The lengths of the base sequences are varied from 3 to78. DPL database has 923 linear peptides and 88 cyclic peptides. The functions of peptides collected by DPL are very wide. It includes 540 entries of antiviral peptides (including SARS-CoV-2), 55 entries of signal peptides, 48 entries of protease inhibitors, 45 entries of anti-hypertension, 37 entries of anticancer peptides, etc. There are 270 different kinds of peptide targets. All peptides in DPL have clear binding targets. Most of the peptides and receptors have 3D structures experimentally verified or predicted by CYCLOPS, I-TASSER and SWISS-MODEL. With the rapid development of the COVID-2019 epidemic, this database also collects the research progress of peptides against coronavirus. In conclusion, DPL is a unique resource, which allows users easily to explore the targets, different structures as well as properties of peptides.

摘要

DPL(http://www.peptide-ligand.cn/)是一个综合性的肽配体数据库。DPL1.0 包含 1044 条肽配体条目,为多肽平台的研究提供了参考。这些数据来自 PubMed-NCBI、PDB、APD3、CAMPR3 等。基本序列的长度从 3 到 78 不等。DPL 数据库有 923 条线性肽和 88 条环状肽。DPL 收集的肽的功能非常广泛。它包括 540 个抗病毒肽(包括 SARS-CoV-2)条目,55 个信号肽条目,48 个蛋白酶抑制剂条目,45 个抗高血压肽条目,37 个抗癌肽条目等。有 270 种不同类型的肽靶标。DPL 中的所有肽都有明确的结合靶标。大多数肽和受体都有通过 CYCLOPS、I-TASSER 和 SWISS-MODEL 实验验证或预测的 3D 结构。随着 COVID-2019 疫情的迅速发展,该数据库还收集了针对冠状病毒的肽的研究进展。总之,DPL 是一个独特的资源,用户可以方便地探索肽的靶标、不同结构和性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/92f7/7678785/70a991023535/baaa089f1.jpg

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