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对从澳大利亚银鸥中分离出的一株广泛耐药的肠炎沙门氏菌血清型阿贡纳进行全基因组序列分析,揭示了其获得了多药耐药质粒。

Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull () Reveals the Acquisition of Multidrug Resistance Plasmids.

机构信息

The ithree institute, University of Technology Sydney, Ultimo, NSW, Australia.

Australian Centre for Genomic Epidemiological Microbiology, University of Technology Sydney, Broadway, NSW, Australia.

出版信息

mSphere. 2020 Nov 25;5(6):e00743-20. doi: 10.1128/mSphere.00743-20.

Abstract

Although most of the approximately 94 million annual human cases of gastroenteritis due to resolve without medical intervention, antimicrobial therapy is recommended for patients with severe disease. Wild birds can be natural hosts of that pose a threat to human health; however, multiple-drug-resistant serovars of have rarely been described. In 2012, silver gull () chicks at a major breeding colony were shown to host , most isolates of which were susceptible to antibiotics. However, multiple-drug-resistant (MDR) with resistance to carbapenems, ceftazidime, and fluoroquinolones was reported from this breeding colony. In this paper, we describe a novel MDR strain subsequently isolated from the same breeding colony. SG17-135, an isolate of with phenotypic resistance to 12 individual antibiotics but only nine antibiotic classes including penicillins, cephalosporins, monobactams, macrolides, fluoroquinolones, aminoglycosides, dihydrofolate reductase inhibitors (trimethoprim), sulfonamides, and glycylcyclines was recovered from a gull chick in 2017. Whole-genome sequence (WGS) analysis of SG17-135 identified it as serovar Agona ( Agona) with a chromosome comprising 4,813,284 bp, an IncHI2 ST2 plasmid (pSG17-135-HI2) of 311,615 bp, and an IncX1 plasmid (pSG17-135-X) of 27,511 bp. pSG17-135-HI2 housed a complex resistance region comprising 16 antimicrobial resistance genes including The acquisition of MDR plasmids by described here poses a serious threat to human health. Our study highlights the importance of taking a One Health approach to identify environmental reservoirs of drug-resistant pathogens and MDR plasmids. Defining environmental reservoirs hosting mobile genetic elements that shuttle critically important antibiotic resistance genes is key to understanding antimicrobial resistance (AMR) from a One Health perspective. Gulls frequent public amenities, parklands, and sewage and other waste disposal sites and carry drug-resistant Here, we report on SG17-135, a strain of serovar Agona isolated from the cloaca of a silver gull chick nesting on an island in geographic proximity to the greater metropolitan area of Sydney, Australia. SG17-135 is closely related to pathogenic strains of Agona, displays resistance to nine antimicrobial classes, and carries important virulence gene cargo. Most of the antibiotic resistance genes hosted by SG17-135 are clustered on a large IncHI2 plasmid and are flanked by copies of IS Wild birds represent an important link in the evolution and transmission of resistance plasmids, and an understanding of their behavior is needed to expose the interplay between clinical and environmental microbial communities.

摘要

尽管每年约有 9400 万例人类胃肠炎病例未经医学干预即可痊愈,但仍建议对严重疾病患者进行抗菌治疗。野生鸟类可能是对人类健康构成威胁的病原体的天然宿主;然而,很少有描述多重耐药(MDR)血清型的。2012 年,在一个主要的繁殖地,银鸥(Larus novaehollandiae)雏鸟被证明携带肠炎沙门氏菌,其中大多数分离株对抗生素敏感。然而,来自该繁殖地的报告显示,存在对碳青霉烯类、头孢他啶和氟喹诺酮类具有耐药性的多重耐药(MDR)肠炎沙门氏菌。在本文中,我们描述了随后从同一繁殖地分离出的一种新型 MDR 菌株。SG17-135 是从 2017 年一只海鸥雏鸟中分离出的肠炎沙门氏菌,具有表型抗 12 种抗生素的耐药性,但仅对包括青霉素类、头孢菌素类、单酰胺类、大环内酯类、氟喹诺酮类、氨基糖苷类、二氢叶酸还原酶抑制剂(甲氧苄啶)、磺胺类和甘氨酰环素类在内的 9 个抗生素类别的抗生素具有耐药性。SG17-135 的全基因组序列(WGS)分析将其鉴定为肠炎沙门氏菌血清型阿贡纳(Agona),其染色体由 4813284bp 组成,IncHI2 ST2 质粒(pSG17-135-HI2)为 311615bp,IncX1 质粒(pSG17-135-X)为 27511bp。pSG17-135-HI2 包含一个复杂的耐药区,包含 16 种抗菌药物耐药基因,包括 本研究中描述的 MDR 质粒的获得对人类健康构成严重威胁。我们的研究强调了采取一种重视健康的方法来确定耐药病原体和 MDR 质粒的环境储库的重要性。确定携带关键重要抗生素耐药基因的移动遗传元件的环境储库是从重视健康的角度理解抗生素耐药性(AMR)的关键。海鸥经常光顾公共设施、公园、污水和其他废物处理场,并携带耐药性 在此,我们报告了从澳大利亚悉尼大都市区附近一个岛屿上筑巢的银鸥雏鸟的泄殖腔中分离出肠炎沙门氏菌血清型阿贡纳(Agona)的 SG17-135 菌株。SG17-135 与致病性肠炎沙门氏菌血清型阿贡纳密切相关,对 9 种抗菌药物具有耐药性,并携带重要的毒力基因。SG17-135 携带的大多数抗生素耐药基因都聚集在一个大型 IncHI2 质粒上,并且被 IS 的拷贝所包围。野生鸟类是耐药质粒进化和传播的重要环节,需要了解它们的行为,以揭示临床和环境微生物群落之间的相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/94b8/7690955/d64fbfcb228d/mSphere.00743-20-f0001.jpg

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