Fish Molecular Biology Laboratory, Department of Zoology, University of Delhi, Delhi-110007, India.
Bacterial Pathogenesis Laboratory, Department of Zoology, University of Delhi, Delhi-110007, India.
J Environ Manage. 2021 Feb 15;280:111744. doi: 10.1016/j.jenvman.2020.111744. Epub 2020 Dec 3.
The genus Sphingopyxis was first reported in the year 2001. Phylogenetically, Sphingopyxis is well delineated from other genera Sphingobium, Sphingomonas and Novosphingobium of sphingomonads group, family Sphingomonadaceae of Proteobacteria. To date (at the time of writing), the genus Sphingopyxis comprises of twenty validly published species available in List of Prokaryotic Names with Standing in Nomenclature. Sphingopyxis spp. have been isolated from diverse niches including, agricultural soil, marine and fresh water, caves, activated sludge, thermal spring, oil and pesticide contaminated soil, and heavy metal contaminated sites. Sphingopyxis species have drawn considerable attention not only for their ability to survive under extreme environments, but also for their potential to degrade number of xenobiotics and other environmental contaminants that impose serious threat to human health. At present, genome sequence of both cultivable and non-cultivable strains (metagenome assembled genome) are available in the public databases (NCBI) and genome wide studies confirms the presence of mobile genetic elements and plethora of degradation genes and pathways making them a potential candidate for bioremediation. Beside genome wide predictions there are number of experimental evidences confirm the degradation potential of bacteria belonging to genus Sphingopyxis and also the production of different secondary metabolites that help them interact and survive in their ecological niches. This review provides detailed information on ecology, general characteristic and the significant implications of Sphingopyxis species in environmental management along with the bio-synthetic potential.
该属 Sphingopyxis 于 2001 年首次报道。系统发育上,Sphingopyxis 与鞘氨醇单胞菌属的 Sphingobium、Sphingomonas 和 Novosphingobium 以及变形菌门的鞘氨醇单胞菌科(Sphingomonadaceae)区分开来。截至(撰写本文时),该属 Sphingopyxis 包括 20 个有效发表的种,可在《具有命名地位的原核生物名称列表》中查到。Sphingopyxis 种已从各种生境中分离出来,包括农业土壤、海洋和淡水、洞穴、活性污泥、温泉、石油和农药污染土壤以及重金属污染地点。Sphingopyxis 种不仅因其在极端环境下生存的能力而受到关注,而且因其能够降解许多对人类健康构成严重威胁的外来化合物和其他环境污染物的潜力而受到关注。目前,可培养和不可培养菌株(宏基因组组装基因组)的基因组序列都可在公共数据库(NCBI)中获得,全基因组研究证实了移动遗传元件和大量降解基因和途径的存在,使它们成为生物修复的潜在候选物。除了全基因组预测外,还有许多实验证据证实了属于 Sphingopyxis 属的细菌的降解潜力,以及产生不同的次生代谢物,这些有助于它们在其生态位中相互作用和生存。本综述提供了有关 Sphingopyxis 种在环境管理中的生态学、一般特征和重要意义以及生物合成潜力的详细信息。