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通过对3822例英国生物银行心脏磁共振成像进行无监督分析来识别病理聚类

Pathological Cluster Identification by Unsupervised Analysis in 3,822 UK Biobank Cardiac MRIs.

作者信息

Zheng Qiao, Delingette Hervé, Fung Kenneth, Petersen Steffen E, Ayache Nicholas

机构信息

Université Côte d'Azur, Inria, Sophia Antipolis, Valbonne, France.

National Institute for Health Research Barts Biomedical Research Centre, William Harvey Research Institute, Queen Mary University of London, London, United Kingdom.

出版信息

Front Cardiovasc Med. 2020 Nov 16;7:539788. doi: 10.3389/fcvm.2020.539788. eCollection 2020.

Abstract

We perform unsupervised analysis of image-derived shape and motion features extracted from 3,822 cardiac Magnetic resonance imaging (MRIs) of the UK Biobank. First, with a feature extraction method previously published based on deep learning models, we extract from each case 9 feature values characterizing both the cardiac shape and motion. Second, a feature selection is performed to remove highly correlated feature pairs. Third, clustering is carried out using a Gaussian mixture model on the selected features. After analysis, we identify 2 small clusters that probably correspond to 2 pathological categories. Further confirmation using a trained classification model and dimensionality reduction tools is carried out to support this finding. Moreover, we examine the differences between the other large clusters and compare our measures with the ground truth.

摘要

我们对从英国生物银行的3822例心脏磁共振成像(MRI)中提取的图像衍生形状和运动特征进行了无监督分析。首先,使用先前基于深度学习模型发表的特征提取方法,我们从每个病例中提取9个表征心脏形状和运动的特征值。其次,进行特征选择以去除高度相关的特征对。第三,对选定的特征使用高斯混合模型进行聚类。经过分析,我们识别出2个小簇,它们可能对应于2种病理类别。使用经过训练的分类模型和降维工具进行进一步确认以支持这一发现。此外,我们检查了其他大簇之间的差异,并将我们的测量结果与真实情况进行比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b208/7701336/47dba6141216/fcvm-07-539788-g0001.jpg

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